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23:00:00,0.0,0.005633754145871897,280.01066176679996,3.215840422027042,4.264533787790383,262.3500817468833,0.0,101149.14990804132 diff --git a/python/lib/client/dmod/client/_version.py b/python/lib/client/dmod/client/_version.py index 2b8877c50..ef7eb44d9 100644 --- a/python/lib/client/dmod/client/_version.py +++ b/python/lib/client/dmod/client/_version.py @@ -1 +1 @@ -__version__ = '0.5.0' +__version__ = '0.6.0' diff --git a/python/lib/client/setup.py b/python/lib/client/setup.py index 280337ecc..b4ca71ea7 100644 --- a/python/lib/client/setup.py +++ b/python/lib/client/setup.py @@ -22,7 +22,7 @@ license='', include_package_data=True, #install_requires=['websockets', 'jsonschema'],vi - install_requires=['dmod-core>=0.11.0', 'websockets>=8.1', 'pydantic>=1.10.8,~=1.10', 'dmod-communication>=0.17.0', + install_requires=['dmod-core>=0.15.0', 'websockets>=8.1', 'pydantic>=1.10.8,~=1.10', 'dmod-communication>=0.17.0', 'dmod-externalrequests>=0.6.0'], packages=find_namespace_packages(include=['dmod.*'], exclude=['dmod.test']) ) diff --git a/python/lib/core/dmod/core/_version.py b/python/lib/core/dmod/core/_version.py index a842d05a7..6fccdee46 100644 --- a/python/lib/core/dmod/core/_version.py +++ b/python/lib/core/dmod/core/_version.py @@ -1 +1 @@ -__version__ = '0.15.0' +__version__ = '0.15.1' diff --git a/python/lib/core/dmod/core/dataset.py b/python/lib/core/dmod/core/dataset.py index e97222f16..72f428d65 100644 --- a/python/lib/core/dmod/core/dataset.py +++ b/python/lib/core/dmod/core/dataset.py @@ -8,12 +8,13 @@ from .serializable import Serializable, ResultIndicator from .enum import PydanticEnum -from typing import Any, Callable, ClassVar, Dict, FrozenSet, List, Optional, Set, Tuple, Type, Union +from pathlib import Path +from typing import Any, Callable, ClassVar, Dict, FrozenSet, List, Optional, Set, Tuple, Type, TypeVar, Union from pydantic import Field, validator, PrivateAttr from pydantic.fields import ModelField from uuid import UUID, uuid4 -from .common.reader import Reader +from .common.reader import Reader, ReadSeeker class DatasetType(PydanticEnum): @@ -486,6 +487,334 @@ def unlink_to_dataset(self, dataset: Dataset) -> bool: return dataset.manager is not None and dataset.manager.unlink_user(user=self, dataset=dataset) +DataItem = TypeVar('DataItem', bound=Union[bytes, ReadSeeker, Path]) + + +class AbstractDomainDetector(ABC): + """ Abstraction for something that will automatically detect a :class:`DataDomain` for some data. """ + + @abstractmethod + def detect(self, **kwargs) -> DataDomain: + """ + Detect and return the data domain. + + Parameters + ---------- + kwargs + Optional kwargs applicable to the subtype, which may enhance or add to the domain detection and generation + capabilities, but which should not be required to produce a valid domain. + + Returns + ------- + DataDomain + The detected domain. + + Raises + ------ + DmodRuntimeError + If it was not possible to properly detect the domain. + """ + pass + + +class ItemDataDomainDetectorRegistry: + """ A singleton registry in which to track the subtypes of :class`ItemDataDomainDetector`. """ + + _instance = None + + @classmethod + def get_instance(cls) -> ItemDataDomainDetectorRegistry: + """ Get the singleton registry instance. """ + if cls._instance is None: + cls._instance = ItemDataDomainDetectorRegistry() + return cls._instance + + def __init__(self): + if self._instance is not None: + raise RuntimeError(f"Attempting to create second {self.__class__.__name__} instance!") + self._detectors: Dict[str, Type[ItemDataDomainDetector]] = dict() + """ All registered subclasses, keyed by name. """ + self._formats_to_detectors: Dict[DataFormat, Set[str]] = {f: set() for f in DataFormat} + """ + Collection of :class:`DataFormat` enum values mapped to sets containing the names of the registered subclasses + that are associated with that particular format. + """ + + def is_registered(self, entry: Union[str, Type[ItemDataDomainDetector]]) -> bool: + """ + Whether this is a registered subclass or the registered name of one. + + Parameters + ---------- + entry: Union[str, Type[ItemDataDomainDetector]] + The potential registration name or subclass type. + + Returns + ------- + bool + Whether this is a registered subclass or the registered name of one. + """ + return (entry if isinstance(entry, str) else entry.get_registration_name()) in self._detectors + + def get_for_format(self, data_format: DataFormat) -> List[Type[ItemDataDomainDetector]]: + """ + Get a list (sorted by registration name) of the detector subclasses associated with the given format. + + Parameters + ---------- + data_format: DataFormat + The data format of interest. + + Returns + ------- + List[Type[ItemDataDomainDetector]] + The sorted detector subclasses associated with the given format. + """ + return [self._detectors[name] for name in sorted(self._formats_to_detectors[data_format])] + + def get_for_name(self, name: str) -> Type[ItemDataDomainDetector]: + """ + Get the registered subclass for the given registration name. + + Parameters + ---------- + name: str + The subclass registration name. + + Returns + ------- + Type[ItemDataDomainDetector] + The registered subclass for the given registration name. + + Raises + ------ + KeyError + Raised if this is not a valid, recognized registration name. + """ + return self._detectors[name] + + def register(self, subclass: Type[ItemDataDomainDetector]): + """ + Register the given subclass of :class:`ItemDataDomainDetector`. + + Parameters + ---------- + subclass: Type[ItemDataDomainDetector] + A subclass of :class:`ItemDataDomainDetector`. + + Notes + ----- + If an already-registered subclass is passed in another call to this method, nothing will happen. The instance's + state will not change, nor will an error be thrown, and the method will quietly return. + + Raises + ------ + DmodRuntimeError + If the registration name is already in use for a different subclass. + """ + name = subclass.get_registration_name() + if name not in self._detectors: + self._detectors[name] = subclass + if subclass.get_data_format() is not None: + self._formats_to_detectors[subclass.get_data_format()].add(name) + elif self._detectors[name] != subclass: + raise DmodRuntimeError(f"{self.__class__.__name__} failed to register subclass '{subclass.__name__}' with " + f"registration name '{name}' that is already in use") + + def unregister(self, subclass: Type[ItemDataDomainDetector]): + """ + Unregister the given subclass of :class:`ItemDataDomainDetector`. + + Parameters + ---------- + subclass + + Raises + ------- + DmodRuntimeError + If the given subclass was not already registered. + """ + name = subclass.get_registration_name() + if name not in self._detectors: + raise DmodRuntimeError(f"{self.__class__.__name__} can't unregister unknown name '{name}'") + subclass = self._detectors.pop(name) + self._formats_to_detectors[subclass.get_data_format()].remove(name) + + +class ItemDataDomainDetector(AbstractDomainDetector, ABC): + """ + Type that can examine a data item and detect its individual :class:`DataDomain`. + + Abstraction for detecting the of a single data item. Here, a data item specifically means either :class:`bytes` + object with raw data, a :class:`ReadSeeker` object that can read data multiple times, or a :class:`Path` object + pointing to a file (not a directory). + + This class provides two class functions important for use with the :class:`ItemDataDomainDetectorRegistry` singleton + object: :method:`get_data_format` and :method:`get_registration_name`. Subclasses must be implemented to set + backing class variables if they want to change the default behavior. + + The :method:`get_data_format` class method helps the registry (and other users) identify the :class:`DataFormat` for + which a subclass can determine domains. It is optional, though, and the default is ``None``. + + The :method:`get_registration_name` method provides a unique registration name, primarily intended for use with the + registry. If the backing class attribute is not explicitly set, it will default to the name of the subclass. + + Note that subtypes must explicitly be registered with the :class:`ItemDataDomainDetectorRegistry` singleton. + """ + + _data_format: Optional[DataFormat] = None + """ The associated :class:`DataFormat` of this subclass. """ + _registration_name: Optional[str] = None + """ The registration name identifier for this subclass; it will be replaced with class name if ``None``. """ + + @classmethod + def get_data_format(cls) -> Optional[DataFormat]: + """ + Get the associated data format for this subclass of :class:`ItemDataDomainDetector`, if it has one. + + Returns + ------- + Optional[DataFormat] + The associated :class:`DataFormat` of this subclass, if it has one; otherwise ``None``. + """ + return cls._data_format + + @classmethod + def get_registration_name(cls) -> str: + """ + Get the registration name for this subclass. + + If the backing private class attribute is set to ``None``, this method will return the subclass's ``__name__``. + + Returns + ------- + str + The registration name for this subclass. + """ + return cls._registration_name if cls._registration_name else cls.__name__ + + def __init__(self, item: DataItem, item_name: Optional[str] = None, decode_format: str = 'utf-8', *args, **kwargs): + super().__init__(*args, **kwargs) + self._item: DataItem = item + """ The data item for which to detect a domain. """ + is_item_file = isinstance(self._item, Path) + self._item_name = self._item.name if is_item_file else item_name + """ Name for the item; in some situations, contains important constraint metadata (e.g. catchment name). """ + self._decode_format = decode_format + """ A decoder format sometimes used when reading data item in order to get metadata. """ + if is_item_file and self._item.is_dir(): + raise ValueError(f"{self.__class__.__name__} can't initialize with a directory path as its data item") + + +class UniversalItemDomainDetector(ItemDataDomainDetector): + """ + General type of detector that works with all supported formats by trying all registered, format-specific subtypes. + """ + + def detect(self, **kwargs) -> DataDomain: + """ + Detect and return the data domain. + + Detect a domain by calling the analogous method of an instance of some or all registered subclasses of + :class:`ItemDataDomainDetector`. Selection of the right subclass to use for this is based on brute-force + trials - i.e., a subclass is selected, an instance is created, the ``detect`` method is called, and we assess + what happens - along with an early exit mechanism for explicit format suggestions. + + Subclasses are tried in groups according to their associated :class:`DataFormat`. The order of groups may be + controlled by providing one or more format "suggestions", which will be tried first in the order provided. Also, + one or more excluded formats can be optionally provided. Iteration order of subclasses within a group is based + on registration name by default - i.e., the value from :method:`ItemDataDomainDetector.get_registration_name` + for each subclass - but a sorting key function can be provided to control this also. + + If/when a subclass instance's ``detect`` call returns a domain, no other subclasses for that format group are + tried, but this function only returns that domain value immediately if the associated format was a provided + suggestion. Otherwise, iteration continues to the next group. This is important, because if more than one + class can detect a domain, there is an implicit ambiguity in the domain, and a :class:`DmodRuntimeError` is + raised. + + Parameters + ---------- + kwargs + Optional kwargs applicable to the subtype, which may enhance or add to the domain detection and generation + capabilities, but which should not be required to produce a valid domain. + + Keyword Args + ------------ + excluded_formats: Union[DataFormat, Set[DataFormat]] + Optional individual or set of :class:`DataFormat` to be excluded from testing; a :class:`ValueError` is + raised if a format appears in both this and ``suggested_formats``. + suggested_formats: Union[DataFormat, List[DataFormat]] + An optional :class:`DataFormat` or list of :class:`DataFormat` values to try first, with any successes + being immediately returned; a :class:`ValueError` is raised if a format appears more than once across both + this and ``excluded_formats``. + sort_key: + Optional function of one argument (the subclass type) used to extract a comparison key from each registered + subclasses when attempting to determine the order in which to try them (within the context of those + associated with the particular data format being tried); if not provided, the order is based on each + subclass's registration ``name``. + + Returns + ------- + DataDomain + The detected domain. + + Raises + ------ + ValueError + Raised if a :class:`DataFormat` appears multiple times across both ``excluded_formats`` and + ``suggested_formats``; i.e., if any data format value is duplicated in the hypothetical list produced by + ``list(kwargs.get('excluded_formats', [])) + list(kwargs.get('suggested_formats', []))``. + DmodRuntimeError + If it was not possible to properly detect the domain. + """ + def try_detection(d_format: DataFormat) -> Optional[DataDomain]: + subclasses = ItemDataDomainDetectorRegistry.get_instance().get_for_format(d_format) + if 'sort_key' in kwargs: + subclasses = sorted(subclasses, key=kwargs['sort_key']) + for subclass_type in subclasses: + try: + return subclass_type(item=self._item, item_name=self._item_name).detect() + except: + pass + return None + + excluded = kwargs.get('excluded_formats', set()) + if isinstance(excluded, DataFormat): + excluded = {excluded} + suggested = kwargs.get('suggested_formats', list()) + if isinstance(suggested, DataFormat): + suggested = [suggested] + if not excluded.isdisjoint(suggested): + raise ValueError(f"Can't include data format in both exclusions and suggestions for domain detection.") + if len(suggested) != len(set(suggested)): + raise ValueError(f"Can't include data format multiple times in ordered suggestions for domain detection.") + + remaining_formats = {df for df in DataFormat if df not in excluded} + + # Try suggestions first, returning immediately if any are successful + for data_format in suggested: + remaining_formats.remove(data_format) + result = try_detection(d_format=data_format) + if result is not None: + return result + + # Now we get to others + main_trials = (try_detection(d_format=df) for df in remaining_formats) + main_results = [t for t in main_trials if t is not None] + if len(main_results) == 0: + raise DmodRuntimeError("No domain could be detected for item.") + elif len(main_results) == 1: + return main_results[0] + # Multiple results mean there's a problem (also, they can't be equal because they will have different formats) + else: + raise DmodRuntimeError(f"Multiple conflicting domain detected for item in the following formats: " + f"{','.join([d.data_format.name for d in main_results])}") + + +# Register the universal tracker type +ItemDataDomainDetectorRegistry.get_instance().register(UniversalItemDomainDetector) + + class DatasetManager(ABC): """ Abstract representation of manager of ::class:`Dataset` instances. diff --git a/python/lib/modeldata/dmod/modeldata/_version.py b/python/lib/modeldata/dmod/modeldata/_version.py index 9d1bb721b..f323a57be 100644 --- a/python/lib/modeldata/dmod/modeldata/_version.py +++ b/python/lib/modeldata/dmod/modeldata/_version.py @@ -1 +1 @@ -__version__ = '0.10.0' +__version__ = '0.11.0' diff --git a/python/lib/modeldata/dmod/modeldata/data/item_domain_detector.py b/python/lib/modeldata/dmod/modeldata/data/item_domain_detector.py new file mode 100644 index 000000000..2dc770164 --- /dev/null +++ b/python/lib/modeldata/dmod/modeldata/data/item_domain_detector.py @@ -0,0 +1,211 @@ +from dmod.core.meta_data import DataDomain, DataFormat, DiscreteRestriction, StandardDatasetIndex, TimeRange +from dmod.core.common.reader import ReadSeeker +from dmod.core.exception import DmodRuntimeError +from dmod.core.dataset import ItemDataDomainDetector +from pandas import read_csv as pandas_read_csv + +from typing import Optional +from io import StringIO +import re + +from ..hydrofabric.geopackage_hydrofabric import GeoPackageHydrofabric + +# Try to do this if ngen-config package is available +try: + import ngen.config.realization + __NGEN_CONFIG_INSTALLED = True +except ModuleNotFoundError: + __NGEN_CONFIG_INSTALLED = False + + +class AorcCsvFileDomainDetector(ItemDataDomainDetector): + """ + Subclass for detecting domains of NextGen regridded per-catchment AORC forcing CSV files. + + Instances must be explicitly or implicitly provided an item name along with the item. Receiving a :class:`Path` + object implicitly satisfies this, with the object's ``name`` property used. This is required because the applicable + catchment for data is not within the data itself; the convention is to include the catchment id as part of the file + name. + """ + + _csv_header: str = "Time,RAINRATE,Q2D,T2D,U2D,V2D,LWDOWN,SWDOWN,PSFC" + _data_format = DataFormat.AORC_CSV + _datetime_format: str = "%Y-%m-%d %H:%M:%S" + + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs) + if self._item_name is None: + raise DmodRuntimeError(f"{self.__class__.__name__} must be passed an item name on init unless item is file") + + self._num_time_steps = None + + def _get_catchment_id(self) -> str: + matches = re.match('^.*(cat)[_-](\d+)\D.*$', self._item_name) + if matches: + return f"{matches.group(1)}-{matches.group(2)}" + else: + raise DmodRuntimeError(f"{self.__class__.__name__} couldn't parse cat id from name '{self._item_name}'") + + def _get_cat_restriction(self) -> DiscreteRestriction: + """ Get :class:`DiscreteRestriction` defining applicable catchments (i.e., catchment) for the domain. """ + return DiscreteRestriction(variable=StandardDatasetIndex.CATCHMENT_ID, values=[self._get_catchment_id()]) + + def detect(self, **kwargs) -> DataDomain: + """ + Detect and return the data domain. + + Parameters + ---------- + kwargs + Optional kwargs applicable to the subtype, which may enhance or add to the domain detection and generation + capabilities, but which should not be required to produce a valid domain. + + Returns + ------- + DataDomain + The detected domain. + + Raises + ------ + DmodRuntimeError + If it was not possible to properly detect the domain. + """ + + # Do this early to fail here rather than try to load the dataframe + cat_restriction = self._get_cat_restriction() + data = StringIO(self._item.decode(self._decode_format)) if isinstance(self._item, bytes) else self._item + dt_index = self.get_data_format().indices_to_fields()[StandardDatasetIndex.TIME] + # TODO: (later) perhaps do a little more about the header checking + df = pandas_read_csv(data, parse_dates=[0]) + self._num_time_steps = df.shape[0] + date_range = TimeRange(begin=df.iloc[0][dt_index].to_pydatetime(), end=df.iloc[-1][dt_index].to_pydatetime()) + return DataDomain(data_format=self.get_data_format(), continuous_restrictions=[date_range], + discrete_restrictions=[cat_restriction]) + + +# TODO: track and record hydrofabric ids and file names of what's out there so that we recognize known versions/regions + + +# TODO: might need to expand things in the future ... there are other geopackage formats (e.g., older NextGen +# hydrofabric versions that used "id" instead of "divide_id") and maybe we need to account for that in detectors (and +# in formats) +class GeoPackageHydrofabricDomainDetector(ItemDataDomainDetector): + + _data_format = DataFormat.NGEN_GEOPACKAGE_HYDROFABRIC_V2 + + def _is_region_string_for_conus(self, region_str: Optional[str]) -> bool: + """ + Whether this is a region string signifies CONUS. + + Parameters + ---------- + region_str: Optional[str] + A region string, or ``None``. + + Returns + ------- + bool + Whether there was a region string provided that indicates CONUS. + """ + if not isinstance(region_str, str): + return False + else: + return region_str.strip().lower() == 'conus' + + def detect(self, **kwargs) -> DataDomain: + """ + Detect and return the data domain. + + Parameters + ---------- + kwargs + Optional kwargs applicable to the subtype, which may enhance or add to the domain detection and generation + capabilities, but which should not be required to produce a valid domain. + + Keyword Args + ------------ + version: str + A version string for a constraint using the ``HYDROFABRIC_VERSION`` index. + region: str + A region string for a constraint using the ``HYDROFABRIC_REGION`` index; if provided, it will be converted + to lower case and have any non-alphanumeric characters removed before use. + + Returns + ------- + DataDomain + The detected domain. + + Raises + ------ + DmodRuntimeError + If it was not possible to properly detect the domain. + """ + # TODO: (later) probably isn't necessary to treat separately, but don't have a good way to test yet + if isinstance(self._item, ReadSeeker): + gpkg_data = self._item.read() + self._item.seek(0) + else: + gpkg_data = self._item + + if isinstance(kwargs.get('region'), str): + raw_str = kwargs['region'].strip().lower() + if raw_str == 'conus': + vpu = None + conus = True + else: + conus = False + pattern = re.compile('(vpu)([-_]?)(\d+)') + matches = pattern.match(raw_str) + vpu = int(matches.groups()[-1]) if matches else None + else: + vpu = None + conus = False + + try: + hydrofabric = GeoPackageHydrofabric.from_file(geopackage_file=gpkg_data, vpu=vpu, is_conus=conus) + d_restricts = [ + # Define range of catchment ids for catchment ids + DiscreteRestriction(variable=StandardDatasetIndex.CATCHMENT_ID, + values=list(hydrofabric.get_all_catchment_ids())), + # Define hydrofabric id restriction for domain + DiscreteRestriction(variable=StandardDatasetIndex.HYDROFABRIC_ID, values=[hydrofabric.uid])] + # If included, also append region restriction + # TODO: (later) implement this part later + # TODO: (later) consider whether conus should literally also include all the individual VPUs, plus "CONUS" + if hydrofabric.is_conus: + d_restricts.append(DiscreteRestriction(variable=StandardDatasetIndex.HYDROFABRIC_REGION, + values=["CONUS"])) + elif vpu is not None: + d_restricts.append(DiscreteRestriction(variable=StandardDatasetIndex.HYDROFABRIC_REGION, + values=[f"VPU{vpu:02d}"])) + if 'version' in kwargs: + d_restricts.append(DiscreteRestriction(variable=StandardDatasetIndex.HYDROFABRIC_VERSION, + values=[kwargs['version']])) + + return DataDomain(data_format=DataFormat.NGEN_GEOPACKAGE_HYDROFABRIC_V2, discrete_restrictions=d_restricts) + except Exception as e: + raise DmodRuntimeError(f"{self.__class__.__name__} encountered {e.__class__.__name__} attempting to detect " + f"domain for data item: {e!s}") + + +if __NGEN_CONFIG_INSTALLED: + import json + + class RealizationConfigDomainDetector(ItemDataDomainDetector): + + _data_format = DataFormat.NGEN_REALIZATION_CONFIG + + def detect(self, **kwargs) -> DataDomain: + try: + real_obj = ngen.config.realization.NgenRealization(**json.load(self._item)) + except Exception as e: + raise DmodRuntimeError(f"{self.__class__.__name__} failed detect due to {e.__class__.__name__}: {e!s}") + + # When there is a global config, make catchment restriction values empty list to indicate "all" + has_global_config = real_obj.global_config is not None and real_obj.global_config.formulations + cat_restrict = DiscreteRestriction(variable=StandardDatasetIndex.CATCHMENT_ID, + values=[] if has_global_config else sorted(real_obj.catchments.keys())) + time_range = TimeRange(begin=real_obj.time.start_time, end=real_obj.time.end_time) + # An individual file won't have a data id (i.e., data_id only applies to a Dataset or collection) + return DataDomain(data_format=self.get_data_format(), continuous_restrictions=[time_range], + discrete_restrictions=[cat_restrict]) diff --git a/python/lib/modeldata/dmod/test/__init__.py b/python/lib/modeldata/dmod/test/__init__.py index e69de29bb..0b3cf7158 100644 --- a/python/lib/modeldata/dmod/test/__init__.py +++ b/python/lib/modeldata/dmod/test/__init__.py @@ -0,0 +1,32 @@ +import git + +from pathlib import Path +from typing import Optional + + +def find_git_root_dir(path: Optional[Path] = None) -> Path: + """ + Given a path (with ``None`` implying the current directory) assumed to be in a Git repo, find repo's root. + + Parameters + ---------- + path : Path + A file path within the project directory structure, or ``None`` to imply use the current directory. + + Returns + ------- + Path + The root directory for the Git repo containing the given/current path. + + Raises + ------- + InvalidGitRepositoryError : If the given path is not within a Git repo. + NoSuchPathError : If the given path is not valid. + BadObject : If the given revision of the obtained ::class:`git.Repo` could not be found. + ValueError : If the rev of the obtained ::class:`git.Repo` couldn't be parsed + IndexError: If an invalid reflog index is specified. + """ + if path is None: + path = Path('.') + git_repo = git.Repo(path, search_parent_directories=True) + return Path(git_repo.git.rev_parse("--show-toplevel")) \ No newline at end of file diff --git a/python/lib/modeldata/dmod/test/test_aorc_csv_file_domain_detector.py b/python/lib/modeldata/dmod/test/test_aorc_csv_file_domain_detector.py new file mode 100644 index 000000000..9881fc140 --- /dev/null +++ b/python/lib/modeldata/dmod/test/test_aorc_csv_file_domain_detector.py @@ -0,0 +1,73 @@ +import unittest +from datetime import datetime + +from dmod.core.meta_data import DataFormat, StandardDatasetIndex +from dmod.core.dataset import ItemDataDomainDetectorRegistry +from ..modeldata.data.item_domain_detector import AorcCsvFileDomainDetector +from . import find_git_root_dir + + +class TestAorcCsvFileDomainDetector(unittest.TestCase): + + def setUp(self): + self.detector_subclass = AorcCsvFileDomainDetector + self.expected_data_format = DataFormat.AORC_CSV + self.registry = ItemDataDomainDetectorRegistry.get_instance() + self.registry.register(self.detector_subclass) + + # Setup example 0 + self.example_data = {0: find_git_root_dir().joinpath("data/example_forcing_aorc_csv/cat-12.csv")} + self.example_begins = {0: datetime.strptime("2016-01-01 00:00:00", self.detector_subclass._datetime_format)} + self.example_ends = {0: datetime.strptime("2016-01-31 23:00:00", self.detector_subclass._datetime_format)} + self.example_cat_id = {0: "cat-12"} + + def test_get_data_format_0_a(self): + """ Test that we get the correct data format for this subclass type. """ + self.assertEqual(self.expected_data_format, self.detector_subclass.get_data_format()) + + def test_registration_0_a(self): + """ Test that registration added this type to superclass's registered collection. """ + self.assertTrue(self.registry.is_registered(self.detector_subclass)) + + def test_detect_0_a(self): + """ Test that detect returns a domain with the right data format. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(self.expected_data_format, domain.data_format) + + def test_detect_0_b(self): + """ Test that detect returns a domain with the right begin time. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + time_range = domain.continuous_restrictions[StandardDatasetIndex.TIME] + self.assertEqual(self.example_begins[ex_idx], time_range.begin) + + def test_detect_0_c(self): + """ Test that detect returns a domain with the right end time. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + time_range = domain.continuous_restrictions[StandardDatasetIndex.TIME] + self.assertEqual(self.example_ends[ex_idx], time_range.end) + + def test_detect_0_d(self): + """ Test that detect returns a domain with a single catchment id restriction. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(1, len(domain.discrete_restrictions[StandardDatasetIndex.CATCHMENT_ID].values)) + + def test_detect_0_e(self): + """ Test that detect returns a domain with the right catchment id restriction. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(self.example_cat_id[ex_idx], + domain.discrete_restrictions[StandardDatasetIndex.CATCHMENT_ID].values[0]) diff --git a/python/lib/modeldata/dmod/test/test_geopackage_hydrofabric_domain_detector.py b/python/lib/modeldata/dmod/test/test_geopackage_hydrofabric_domain_detector.py new file mode 100644 index 000000000..c026ce502 --- /dev/null +++ b/python/lib/modeldata/dmod/test/test_geopackage_hydrofabric_domain_detector.py @@ -0,0 +1,94 @@ +import unittest + +from dmod.core.meta_data import DataFormat, StandardDatasetIndex +from dmod.core.dataset import ItemDataDomainDetectorRegistry +from ..modeldata.data.item_domain_detector import GeoPackageHydrofabricDomainDetector + +from . import find_git_root_dir + + +class TestGeoPackageHydrofabricDomainDetector(unittest.TestCase): + + def setUp(self): + self.detector_subclass = GeoPackageHydrofabricDomainDetector + self.expected_data_format = DataFormat.NGEN_GEOPACKAGE_HYDROFABRIC_V2 + self.registry = ItemDataDomainDetectorRegistry.get_instance() + self.registry.register(self.detector_subclass) + self.hyfab_ver = "2.0.1" + + # Setup example 0 + self.example_data = {0: find_git_root_dir().joinpath("data/example_hydrofabric_2/hydrofabric.gpkg")} + self.example_vpu = {0: "vpu-9"} + self.example_restriction_vpu = {0: "VPU09"} + self.example_cat_ids = {0: sorted(['cat-8', 'cat-5', 'cat-9', 'cat-6', 'cat-7', 'cat-10', 'cat-11'])} + + def test_get_data_format_0_a(self): + """ Test that we get the correct data format for this subclass type. """ + self.assertEqual(self.detector_subclass.get_data_format(), self.expected_data_format) + + def test_registration_0_a(self): + """ Test that registration added this type to superclass's registered collection. """ + self.assertTrue(self.registry.is_registered(self.detector_subclass)) + + def test_detect_0_a(self): + """ Test that detect returns a domain with the right data format. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(version=self.hyfab_ver, region=self.example_vpu[ex_idx]) + self.assertEqual(self.expected_data_format, domain.data_format) + + def test_detect_0_b(self): + """ Test that detect returns a domain with the right catchments. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(version=self.hyfab_ver, region=self.example_vpu[ex_idx]) + self.assertEqual(self.example_cat_ids[ex_idx], + sorted(domain.discrete_restrictions[StandardDatasetIndex.CATCHMENT_ID].values)) + + def test_detect_0_c(self): + """ Test that domain from detect includes version when provided. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(version=self.hyfab_ver, region=self.example_vpu[ex_idx]) + version_restrict = domain.discrete_restrictions[StandardDatasetIndex.HYDROFABRIC_VERSION] + self.assertEqual(1, len(version_restrict.values)) + self.assertEqual(self.hyfab_ver, version_restrict.values[0]) + + def test_detect_0_d(self): + """ Test that domain from detect doesn't include version when not provided. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(region=self.example_vpu[ex_idx]) + self.assertNotIn(StandardDatasetIndex.HYDROFABRIC_VERSION, domain.discrete_restrictions.keys()) + + def test_detect_0_e(self): + """ Test that domain from detect includes region when provided. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(version=self.hyfab_ver, region=self.example_vpu[ex_idx]) + region_restrict = domain.discrete_restrictions[StandardDatasetIndex.HYDROFABRIC_REGION] + self.assertEqual(1, len(region_restrict.values)) + self.assertEqual(self.example_restriction_vpu[ex_idx], region_restrict.values[0]) + + def test_detect_0_f(self): + """ Test that domain from detect includes region when provided. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(version=self.hyfab_ver, region=self.example_restriction_vpu[ex_idx]) + region_restrict = domain.discrete_restrictions[StandardDatasetIndex.HYDROFABRIC_REGION] + self.assertEqual(1, len(region_restrict.values)) + self.assertEqual(self.example_restriction_vpu[ex_idx], region_restrict.values[0]) + + def test_detect_0_g(self): + """ Test that domain from detect doesn't include region when not provided. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect(version=self.hyfab_ver) + self.assertNotIn(StandardDatasetIndex.HYDROFABRIC_REGION, domain.discrete_restrictions.keys()) diff --git a/python/lib/modeldata/dmod/test/test_universal_item_domain_detector.py b/python/lib/modeldata/dmod/test/test_universal_item_domain_detector.py new file mode 100644 index 000000000..7b7e2118d --- /dev/null +++ b/python/lib/modeldata/dmod/test/test_universal_item_domain_detector.py @@ -0,0 +1,106 @@ +import unittest +from datetime import datetime + +from dmod.core.meta_data import DataFormat, StandardDatasetIndex +from dmod.core.dataset import ItemDataDomainDetectorRegistry, UniversalItemDomainDetector + +from ..modeldata.data.item_domain_detector import AorcCsvFileDomainDetector, GeoPackageHydrofabricDomainDetector +from . import find_git_root_dir + + +class TestUniversalItemDomainDetector(unittest.TestCase): + + def setUp(self): + self.registry = ItemDataDomainDetectorRegistry.get_instance() + self.registry.register(AorcCsvFileDomainDetector) + self.registry.register(GeoPackageHydrofabricDomainDetector) + self.detector_subclass = UniversalItemDomainDetector + + # Setup example 0 + self.expected_data_format = {0: DataFormat.AORC_CSV} + self.example_data = {0: find_git_root_dir().joinpath("data/example_forcing_aorc_csv/cat-12.csv")} + self.example_begins = {0: datetime.strptime("2016-01-01 00:00:00", AorcCsvFileDomainDetector._datetime_format)} + self.example_ends = {0: datetime.strptime("2016-01-31 23:00:00", AorcCsvFileDomainDetector._datetime_format)} + self.example_cat_ids = {0: "cat-12"} + + # Setup example 1 + self.expected_data_format[1] = DataFormat.NGEN_GEOPACKAGE_HYDROFABRIC_V2 + self.example_data[1] = find_git_root_dir().joinpath("data/example_hydrofabric_2/hydrofabric.gpkg") + self.example_cat_ids[1] = sorted(['cat-8', 'cat-5', 'cat-9', 'cat-6', 'cat-7', 'cat-10', 'cat-11']) + + def test_get_data_format_0_a(self): + """ Test that we get ``None`` for the data format for this subclass type. """ + self.assertIsNone(self.detector_subclass.get_data_format()) + + def test_registration_0_a(self): + """ Test registration adds this type to superclass's registered collection. """ + self.assertTrue(self.registry.is_registered(self.detector_subclass)) + + def test_registration_0_b(self): + """ Test registration adds first imported type to superclass's registered collection. """ + self.assertTrue(self.registry.is_registered(AorcCsvFileDomainDetector)) + + def test_registration_1_b(self): + """ Test registration adds second imported type to superclass's registered collection. """ + self.assertTrue(self.registry.is_registered(GeoPackageHydrofabricDomainDetector)) + + def test_detect_0_a(self): + """ Test that detect returns a domain with the right data format. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(self.expected_data_format[ex_idx], domain.data_format) + + def test_detect_0_b(self): + """ Test that detect returns a domain with the right begin time. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + time_range = domain.continuous_restrictions[StandardDatasetIndex.TIME] + self.assertEqual(self.example_begins[ex_idx], time_range.begin) + + def test_detect_0_c(self): + """ Test that detect returns a domain with the right end time. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + time_range = domain.continuous_restrictions[StandardDatasetIndex.TIME] + self.assertEqual(self.example_ends[ex_idx], time_range.end) + + def test_detect_0_d(self): + """ Test that detect returns a domain with a single catchment id restriction. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(1, len(domain.discrete_restrictions[StandardDatasetIndex.CATCHMENT_ID].values)) + + def test_detect_0_e(self): + """ Test that detect returns a domain with the right catchment id restriction. """ + ex_idx = 0 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(self.example_cat_ids[ex_idx], + domain.discrete_restrictions[StandardDatasetIndex.CATCHMENT_ID].values[0]) + + def test_detect_1_a(self): + """ Test that detect returns a domain with the right data format. """ + ex_idx = 1 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(self.expected_data_format[ex_idx], domain.data_format) + + def test_detect_1_b(self): + """ Test that detect returns a domain with the right catchments. """ + ex_idx = 1 + + detector = self.detector_subclass(item=self.example_data[ex_idx]) + domain = detector.detect() + self.assertEqual(self.example_cat_ids[ex_idx], + sorted(domain.discrete_restrictions[StandardDatasetIndex.CATCHMENT_ID].values)) + diff --git a/python/lib/modeldata/setup.py b/python/lib/modeldata/setup.py index d551006d1..8d6893285 100644 --- a/python/lib/modeldata/setup.py +++ b/python/lib/modeldata/setup.py @@ -25,7 +25,7 @@ "pandas", "geopandas", "dmod-communication>=0.4.2", - "dmod-core>=0.13.1", + "dmod-core>=0.15.1", "minio", "aiohttp~=3.8", "shapely>=2.0.0",