Skip to content

Error on 'Assigning protein identifications to layers' with group FDR #540

@alessandro-vai

Description

@alessandro-vai

Hello,

I'm encountering a runtime error when attempting to use the group FDR functionality in Philosopher v5.1.2. The process fails at the step "Assigning protein identifications to layers" with the following error:

panic: runtime error: slice bounds out of range [-1:]

goroutine 1 [running]:
github.com/Nesvilab/philosopher/lib/rep.(*Evidence).UpdateLayerswithDatabase(0xc0000fe008, {0xc0000be050, 0x50}, {0x7fffb08e5ca3, 0x4})
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/lib/rep/updater.go:540 +0x28b6
github.com/Nesvilab/philosopher/lib/fil.Run({{0xc0000ba000, 0x24}, {0xc0000be000, 0x50}, {0xc0000ba030, 0x29}, {0xc0000c0000, 0x5f}, {0xc0000c0060, 0x56}, ...})
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/lib/fil/fil.go:178 +0x1085
github.com/Nesvilab/philosopher/cmd.init.func6(0xc0000ae200?, {0xb82828?, 0x4?, 0xb8282c?})
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/cmd/filter.go:47 +0x4b7
github.com/spf13/cobra.(*Command).execute(0x26b9b80, {0xc000099860, 0xd, 0xd})
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/vendor/github.com/spf13/cobra/command.go:920 +0x867
github.com/spf13/cobra.(*Command).ExecuteC(0x26bbb20)
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/vendor/github.com/spf13/cobra/command.go:1044 +0x3a5
github.com/spf13/cobra.(*Command).Execute(...)
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/vendor/github.com/spf13/cobra/command.go:968
github.com/Nesvilab/philosopher/cmd.Execute()
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/cmd/root.go:35 +0x1a
main.main()
	E:/Projects/philosopher/phi-5.1.1_RC/philosopher/main.go:23 +0x85
Process 'PhilosopherFilter' finished, exit code: 2
Process returned non-zero exit code, stopping

The search runs without any issues using Philosopher v5.1.1 and the same versions of the other tools.

Thank you,
Alessandro

log.txt

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions