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Where is the output database? #545

@thh32

Description

@thh32

Trying to make a custom database for a predicted proteome from a microbe.

Below is the command I have used:

docker run -ti -v $(pwd):/mnt fcyucn/fragpipe:23.1 /bin/bash -c "/fragpipe_bin/fragpipe-23.1/fragpipe-23.1/tools/Philosopher/philosopher-v5.1.2 workspace --init; /fragpipe_bin/fragpipe-23.1/fragpipe-23.1/tools/Philosopher/philosopher-v5.1.2 database --custom /mnt/GCA_004354485.faa --contam"

The output is:

time="14:19:33" level=info msg="Executing Workspace  v5.1.2"
time="14:19:33" level=info msg="Creating workspace"
time="14:19:34" level=info msg=Done
time="14:19:34" level=info msg="Executing Database  v5.1.2"
time="14:19:34" level=info msg="Generating the target-decoy database"
time="14:19:34" level=info msg="Creating file"
time="14:19:34" level=info msg=Done

So it appears to have worked! But where is the output database?

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