Philosopher filter: time="11:59:11" level=error msg="Cannot read file. Error parsing the file "

[rjvortega]

Hi,

I am trying to create a spectral library out of my peptide fractions using our Orbitrap Exploris 480. When I use the default DIA_SpecLib_Quant workflow with some minor changes, the run is successful only when I use the psm option in the Spec Lib tab. It encounters an error when using pepXML. I would like to know what causes this error and how to address it.

Please find attached the log file.

log_2025-12-10_11-59-12.txt

Let me know if you need any clarifications. Thank you!

Sincerely,
R. Ortega