Hi @Thomas-VIB,
I replaced the validator by a cleaner script, it can be used by Lim to produce valid sample-sheets that are accepted by the later pipeline.
My new version is at : https://github.com/Nucleomics-VIB/dev_wt_pacbio_samplesheet_validator_cleaner
You can delete the older app folder (validator) and update your git to use my new code
BTW: could you please add gnu awk to your webtool portal docker, the awk now present is very old and does not feature modern awk functions like gensub.
Thanks
Hi @Thomas-VIB,
I replaced the validator by a cleaner script, it can be used by Lim to produce valid sample-sheets that are accepted by the later pipeline.
My new version is at : https://github.com/Nucleomics-VIB/dev_wt_pacbio_samplesheet_validator_cleaner
You can delete the older app folder (validator) and update your git to use my new code
BTW: could you please add gnu awk to your webtool portal docker, the awk now present is very old and does not feature modern awk functions like gensub.
Thanks