From 014011695ef6918e85b898c73ca971a0f491f6d2 Mon Sep 17 00:00:00 2001
From: Jesse Cusack <jesse.cusack@oregonstate.edu>
Date: Tue, 17 Mar 2026 18:32:00 -0700
Subject: [PATCH 1/2] handle files with no data better

---
 src/glide/cli.py        |  4 +++-
 src/glide/process_l1.py | 18 ++++++++++++++++++
 2 files changed, 21 insertions(+), 1 deletion(-)

diff --git a/src/glide/cli.py b/src/glide/cli.py
index ed9948c..4045581 100644
--- a/src/glide/cli.py
+++ b/src/glide/cli.py
@@ -171,7 +171,9 @@ def l2(
 
     out = process_l1.enforce_types(out, conf)
 
-    out.attrs = conf["globals"]["netcdf_attributes"]
+    out.attrs = {
+        k: v for k, v in conf["globals"]["netcdf_attributes"].items() if v is not None
+    }
 
     out.encoding["unlimited_dims"] = {}
 
diff --git a/src/glide/process_l1.py b/src/glide/process_l1.py
index ccfd8ae..9bf132b 100644
--- a/src/glide/process_l1.py
+++ b/src/glide/process_l1.py
@@ -37,6 +37,13 @@ def _format_variables(
     Converts variable units."""
 
     _log.debug("Formatting variables")
+
+    if not config.get("slocum"):
+        raise ValueError(
+            "Configuration has no slocum variable mapping. "
+            "Check that core.yml is properly loaded."
+        )
+
     reduced_name_map = {
         var: name for var, name in config["slocum"].items() if var in ds.variables
     }
@@ -64,6 +71,17 @@ def _format_variables(
     remaining_vars = set(ds.keys()) - set(config["variables"].keys())
     ds = ds.drop_vars(remaining_vars)
 
+    if len(ds.data_vars) == 0:
+        _log.error(
+            "No data variables remain after formatting. Dropped variables: %s. "
+            "Expected slocum variables: %s",
+            list(remaining_vars),
+            list(config["slocum"].keys()),
+        )
+        raise ValueError(
+            "No recognized Slocum variables found in input file. "
+        )
+
     _log.debug("Variables remaining in dataset %s", list(ds.keys()))
 
     ds["trajectory"] = (

From 97f3e784f8a4fa75de0eb62ed48d0e28c43c601c Mon Sep 17 00:00:00 2001
From: Jesse Cusack <jesse.cusack@oregonstate.edu>
Date: Tue, 17 Mar 2026 18:32:19 -0700
Subject: [PATCH 2/2] format

---
 src/glide/process_l1.py | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/glide/process_l1.py b/src/glide/process_l1.py
index 9bf132b..b06eb82 100644
--- a/src/glide/process_l1.py
+++ b/src/glide/process_l1.py
@@ -78,9 +78,7 @@ def _format_variables(
             list(remaining_vars),
             list(config["slocum"].keys()),
         )
-        raise ValueError(
-            "No recognized Slocum variables found in input file. "
-        )
+        raise ValueError("No recognized Slocum variables found in input file. ")
 
     _log.debug("Variables remaining in dataset %s", list(ds.keys()))