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If the 5 min data segment is not fully complete (i.e. there is some gap in data), the data segment is completely unusable.
after December 2023:
multiple fragments are saved in 5 min mseed files, and the correct start and end times are stored in the mseed file. This means that the data can be reconstructed, but at a non-zero computational cost. Spreading this computation to multiple cores is being trying in merging traces in get_acoustic_data takes forever #158
It might also be possible to write a custom merge function that can work much faster
Handling how data is stored on OOI side is a moving target: A quick summary of different time regions is given below to document what I know.