OmegaCommons/CITATION at master · OmegaProject/OmegaCommons · GitHub

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cff-version: 1.0.3
message: If you use OmegaCommons, please cite both the software and the papers as indicated in the scope of each reference.
authors:
  - family-names: Rigano
    given-names: Alessandro
    affiliation: University of Massachusetts Medical School
    email: alessandro.rigano@umassmed.edu
  - family-names: Strambio-De-Castillia
    given-names: Caterina
    affiliation: University of Massachusetts Medical School
    email: caterina.strambio@umassmed.edu
    orcid: https://orcid.org/0000-0002-1069-1816
title: OmegaCommons
version: v0.01.0-beta
doi: https://doi.org/10.5281/zenodo.2538197
date-released: 2019-01-11
repository: https://github.com/OmegaProject/OmegaCommons
description: The OmegaCommons Application Programming Interface (API) facilitates the extraction of OMEGA libraries for custom plugin development. In addition to general utility methods, it includes Java classes used as building blocks for the construction of individual plugins, interfaces necessary to mediate the communication between plugins and the core, and the system used for event-driven communication. Commons API also contains all foundational libraries necessary for trajectory analysis in OMEGA. In addition, Commons API contains data structures that are designed to store image data and metadata as well as the results produced at run time by the OMEGA application.
keywords:
  - java
  - particle-tracking
  - particle-localization
  - particle-detection
  - motion-analysis
  - error-propagation
  - data-provenance
  - data-management
  - classification
  - trajectory-segmentation
license: GNU General Public License v.3
references:
  - type: article
    scope: Cite this paper every time you use this software
    authors:
      - family-names: Rigano
        given-names: Alessandro
        affiliation: University of Massachusetts Medical School
        email: alessandro.rigano@umassmed.edu
      - family-names: Galli
        given-names: Vanni
        affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
      - family-names: Clark
        given-names: Jasmine M
        affiliation: Nell Hodgson Woodruff School of Nursing, Emory University
      - family-names: Pereira
        given-names: Lara E
        affiliation: Division of Sexual Transmitted Diseases Prevention, Centers for Disease Control and Prevention
      - family-names: Grossi
        given-names: Loris
        affiliation:  Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
      - family-names: Luban
        given-names: Jeremy
        affiliation: University of Massachusetts Medical School
        orcid: https://orcid.org/0000-0001-5650-4054
      - family-names: Giulietti
        given-names: Raffaello
        affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
      - family-names: Leidi
        given-names: Tiziano
        affiliation: Scuola Universitaria Superiore della Svizzera Italiana (SUPSI)
      - family-names: Hunter
        given-names: Eric
        affiliation: Emory Vaccine Center at Yerkes National Primate Research Center
      - family-names: Valle
        given-names: Mario
        affiliation: Swiss National Supercomputing Centre
      - family-names: Sbalzarini
        given-names: Ivo F.
        affiliation: Max Planck Institute of Molecular Cell Biology and Genetics in Dresden
      - family-names: Strambio-De-Castillia
        given-names: Caterina
        affiliation: University of Massachusetts Medical School
        email: caterina.strambio@umassmed.edu
        orcid: https://orcid.org/0000-0002-1069-1816
    title: "OMEGA: a software tool for the management, analysis, and dissemination of 	intracellular trafficking data that incorporates motion type classification and quality control"
    year: 2018
    journal: bioRxiv.org
    doi: 10.1101/251850
    url: https://doi.org/10.1101/251850