diff --git a/lomap/gufe_bindings/network_generation.py b/lomap/gufe_bindings/network_generation.py index c9edc9c..33e417d 100644 --- a/lomap/gufe_bindings/network_generation.py +++ b/lomap/gufe_bindings/network_generation.py @@ -44,13 +44,13 @@ def generate_lomap_network( to 0.0 (worst). These values are use as the "distance" between two molecules, and compared against the 'distance_cutoff' parameter distance_cutoff : float - the maximum distance/dissimilarity between two molecules for an edge to be accepted + edges with a score < 1 - distance_cutoff will be rejected. Default is 0.4. max_path_length : int - maximum distance between any two molecules in the resulting network + maximum distance between any two molecules in the resulting network. Default is 6. actives : list[bool] - for each molecule, if it is tagged as an active molecule + for each molecule, if it is tagged as an active molecule max_dist_from_active - when 'actives' is given, constrains the resulting map to + when 'actives' is given, constrains the resulting map to be within this this number of edges (e.g. distance) from an active molecule. Default is 2. require_cycle_covering : bool add cycles into the network radial : bool