diff --git a/.gitmodules b/.gitmodules index 8d8939a..161979b 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,16 +1,15 @@ [submodule "openms-streamlit-template"] path = openms-streamlit-template url = https://github.com/OpenMS/streamlit-template.git -[submodule "umetaflow-gui"] - path = umetaflow-gui - url = https://github.com/axelwalter/umetaflow-gui.git +[submodule "umetaflow"] + path = umetaflow + url = https://github.com/OpenMS/umetaflow.git [submodule "nuxl-app"] path = nuxl-app url = https://github.com/Arslan-Siraj/nuxl-app -[submodule "FLASHViewer"] - path = FLASHViewer - url = https://github.com/t0mdavid-m/FLASHViewer - branch = TaggerViewerDeploy +[submodule "FLASHApp"] + path = FLASHApp + url = https://github.com/OpenMS/FLASHApp.git [submodule "naseweis"] path = naseweis url = https://github.com/poshul/nase-weis diff --git a/FLASHApp b/FLASHApp new file mode 160000 index 0000000..286207c --- /dev/null +++ b/FLASHApp @@ -0,0 +1 @@ +Subproject commit 286207cd2768d5d06998cb5b73750bcfefe94d93 diff --git a/FLASHViewer b/FLASHViewer deleted file mode 160000 index 99dd5a2..0000000 --- a/FLASHViewer +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 99dd5a2f2d06e4df005d3a38673ccc7a45d5ea17 diff --git a/docker-compose.yml b/docker-compose.yml index fca43e8..245aa61 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -17,7 +17,7 @@ services: command: streamlit run openms-streamlit-template/app.py umetaflow: build: - context: ./umetaflow-gui + context: ./umetaflow dockerfile: Dockerfile args: GITHUB_TOKEN: $GITHUB_TOKEN @@ -27,8 +27,8 @@ services: ports: - 28503:8501 # increment port numbers (here 28503) volumes: - - workspaces-umetaflow-gui:/workspaces-umetaflow-gui - command: streamlit run umetaflow-gui/Home.py + - workspaces-umetaflow:/workspaces-umetaflow + command: streamlit run umetaflow/Home.py nuxl-app: build: context: ./nuxl-app @@ -57,19 +57,19 @@ services: volumes: - workspaces-PTMScanner:/workspaces-PTMScanner command: streamlit run PTMScanner/run.py - FLASHViewer: + FLASHApp: build: - context: ./FLASHViewer + context: ./FLASHApp dockerfile: Dockerfile args: GITHUB_TOKEN: $GITHUB_TOKEN - image: flashviewer - container_name: flashviewer + image: flashapp + container_name: flashapp restart: always ports: - 28506:8501 # increment port numbers (here 28506) volumes: - - workspaces-flashviewer:/workspaces-flashviewer + - workspaces-flashapp:/workspaces-flashapp naseweis: build: context: ./naseweis @@ -156,9 +156,9 @@ services: volumes: workspaces-streamlit-template: - workspaces-umetaflow-gui: + workspaces-umetaflow: workspaces-nuxl-app: - workspaces-flashviewer: + workspaces-flashapp: workspaces-naseweis: workspaces-PTMScanner: workspaces-stream-sage: diff --git a/umetaflow b/umetaflow new file mode 160000 index 0000000..957843c --- /dev/null +++ b/umetaflow @@ -0,0 +1 @@ +Subproject commit 957843c4f0a41f15adaa46be498e75e307821c25 diff --git a/umetaflow-gui b/umetaflow-gui deleted file mode 160000 index a69a659..0000000 --- a/umetaflow-gui +++ /dev/null @@ -1 +0,0 @@ -Subproject commit a69a659bc2b0783ab40d2f2afb2831ffcedbf09b