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This repository was archived by the owner on Sep 22, 2019. It is now read-only.
This repository was archived by the owner on Sep 22, 2019. It is now read-only.

Indexing failures in a few studies #34

@jimallman

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@jimallman

Today I used the deployment script to re-index oti, and a few studies failed (details below).

Study ot_232 reports multiple records(?) found, but there's just one JSON with this id in phylesystem-1. This is very similar to a problem discussed in #26:

Indexing http://api.opentreeoflife.org/phylesystem/v1/../ study ot_232 from http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json
Calling "http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies" with data="{'urls': ['http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json']}"

Indexing failed for URL "http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json", study http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json. Message = "More than one hit found for ot:studyId == ot_232. The database is probably corrupt."

Two others failed with no explanation:

Indexing http://api.opentreeoflife.org/phylesystem/v1/../ study ot_31 from http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json
Calling "http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies" with data="{'urls': ['http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json']}"

Indexing failed for URL "http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json", study http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json. Message = "null"
Indexing http://api.opentreeoflife.org/phylesystem/v1/../ study ot_32 from http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json
Calling "http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies" with data="{'urls': ['http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json']}"

Indexing failed for URL "http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json", study http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json. Message = "null"

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