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data.md

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Describe how files in the data folder relate to the supplemental tables in the manuscript

Data File 1 - proteinGroups.txt

Stored remotely on Box

Used in make_figure1.ipynb

This file has the output quantifications for cell samples from MaxQuant.

In the manuscript (DOI LINK) as Supplemental Table 1

combined_protein.txt

Stored remotely on Box Output from FragPipe on the Subject1 B cell and T cell runs

combined_protein_url.txt

Contains the Box download url for combined_protein.txt