diff --git a/scripts/cubic/bootstrap-xcp.sh b/scripts/cubic/bootstrap-xcp.sh index 3b3d76f..c0c6801 100644 --- a/scripts/cubic/bootstrap-xcp.sh +++ b/scripts/cubic/bootstrap-xcp.sh @@ -236,7 +236,7 @@ cd inputs/data 7z x ${subid}_fmriprep-20.2.3.zip cd $wd -mkdir -p ${PWD}/.git/tmp/wdir +mkdir -p ${PWD}/.git/tmp/wkdir singularity run --cleanenv -B ${PWD} pennlinc-containers/.datalad/environments/xcp-abcd-0-0-4/image inputs/data/fmriprep xcp participant \ --despike --lower-bpf 0.01 --upper-bpf 0.08 --participant_label $subid -p 36P -f 10 -w ${PWD}/.git/tmp/wkdir singularity run --cleanenv -B ${PWD} pennlinc-containers/.datalad/environments/xcp-abcd-0-0-4/image inputs/data/fmriprep xcp participant \