From 3c65ada2b24c00c16a2d545a1ace00063704ffca Mon Sep 17 00:00:00 2001 From: Tinashe Michael Tapera Date: Thu, 4 Nov 2021 09:16:02 -0400 Subject: [PATCH] Update bootstrap-fmriprep-multises-audit.sh The code goes into `concat_ds/code`, then comes up one directory to `concat_ds`. This means when you do `datalad run`, your input path should be `csvs` not `concat_ds/csvs` --- scripts/cubic/bootstrap-fmriprep-multises-audit.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/cubic/bootstrap-fmriprep-multises-audit.sh b/scripts/cubic/bootstrap-fmriprep-multises-audit.sh index 7bed511..8ac802e 100644 --- a/scripts/cubic/bootstrap-fmriprep-multises-audit.sh +++ b/scripts/cubic/bootstrap-fmriprep-multises-audit.sh @@ -296,7 +296,7 @@ cd concat_ds/code wget https://raw.githubusercontent.com/PennLINC/RBC/master/PennLINC/Generic/concatenator.py cd .. datalad save -m "added concatenator script" -datalad run -i 'csvs/*' -o 'concat_ds/group_report.csv' --expand inputs --explicit "python code/concatenator.py concat_ds/csvs ${PROJECT_ROOT}/FMRIPREP_AUDIT.csv" +datalad run -i 'csvs/*' -o 'concat_ds/group_report.csv' --expand inputs --explicit "python code/concatenator.py csvs ${PROJECT_ROOT}/FMRIPREP_AUDIT.csv" datalad save -m "generated report" # push changes