`babs check-setup` ignores `path_in_babs` config

[asmacdo]

Summary

babs check-setup hardcodes inputs/data path but babs init and babs submit respects path_in_babs. When using custom paths like sourcedata/raw, check-setup fails with FileNotFoundError.

To Reproduce

1. Use config with path_in_babs: sourcedata/raw
2. Run babs init (succeeds)
3. Run babs check-setup →

   FileNotFoundError: [Errno 2] No such file or directory: '.../analysis/inputs/data'
   

Root Cause

check_setup.py:86 hardcodes the path:

temp_list = get_immediate_subdirectories(op.join(self.analysis_path, 'inputs/data'))

But babs init places data at path_in_babs (e.g., analysis/sourcedata/raw/).

Suggested Fix

Use self.input_datasets[i].babs_project_analysis_path which already has the correct path from config. The loop at line 94 does this correctly - only line 86 has the bug.

Workaround

Skip babs check-setup and go directly to babs submit. Or just put the data in inputs/data.