Skip to content

[PA165980399] Bad GPML for Oxidative Stress Regulatory Pathway (Erythrocyte) #78

@pharmgen

Description

@pharmgen

Latest GPML for pathwayPA165980399 is obsolete.
Use this instead: PA165980399-new.gpml

Note that even the updated GPML has errors that must be fixed:

  • [MAPPINFO]: PD pathway doesn't have 'pharmacodynamic' in name.
  • 'compound II' [id:a056b]: Missing PharmGKB Accession ID.
  • 'GSSG' [id:b98fc]: Missing PharmGKB Accession ID.
  • 'NADPH' [id:bca1e]: Missing PharmGKB Accession ID.
  • 'NADP' [id:d5259]: Missing PharmGKB Accession ID.
  • 'compound I' [id:e223d]: Missing PharmGKB Accession ID.
  • 'O2' [id:e266b]: Missing PharmGKB Accession ID.
  • 'H2O' [id:e45af]: Missing PharmGKB Accession ID.
  • 'H2O2' [id:eefa0]: Missing PharmGKB Accession ID.
  • 'NADPH' [id:f226a]: Missing PharmGKB Accession ID.
  • 'GSH' [id:fabab]: Missing PharmGKB Accession ID.
  • 'H2O' [id:fd0d6]: Missing PharmGKB Accession ID.
  • 'NADPH' [id:ed649]: Missing PharmGKB Accession ID.
  • 'NADP' [id:a90aa]: Missing PharmGKB Accession ID.
  • Activation line [id:a98f4] (from 'Oxidizing Agents' [id:bbb1e] to 'superoxide' [id:c6f2a]): Missing evidence.
  • Activation line [id:ab2d1] (from 'Oxidizing Agents' [id:bbb1e] to 'H2O2' [id:eefa0]): Missing evidence.
  • Degradation line [id:b5426] (from 'GSSG' [id:b98fc] to 'degradation' [id:d4fc8]): Degradation interactions cannot end on anything.
  • Biochemical Reaction line [id:d2164] (from 'H2O' [id:fd0d6] to 'H2O2' [id:eefa0]): Missing evidence.
  • Biochemical Reaction line [id:d22d4] (from 'H2O2' [id:eefa0] to 'O2' [id:e266b]): Missing evidence.
  • Biochemical Reaction line [id:f0cf7] (from 'NADPH' [id:bca1e] to 'NADP' [id:d5259]): Missing evidence.
  • 'out of the cell' [id:e3ba1]: Drawing only elements cannot be used as interaction target.
  • 'Pentose Phosphate Pathway (Erythrocyte)' [id:f50ea]: Drawing only elements cannot be used as interaction target.
  • Biochemical Reaction line [id:f0283] (from 'NADPH' [id:ed649] to 'NADP' [id:a90aa]): Missing evidence.

Metadata

Metadata

Assignees

No one assigned

    Labels

    Type

    No type

    Projects

    No projects

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions