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AI-229 add output artifact and validation (#892)
* changes to add output artifact and validation Signed-off-by: Lillie Dae <lillie.dae@answerdigital.com> --------- Signed-off-by: Lillie Dae <lillie.dae@answerdigital.com>
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‎.licenserc.yaml‎

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- 'src/.vs'
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- 'doc/dependency_decisions.yml'
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- 'docs/templates/**'
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- 'src/Monai.Deploy.WorkflowManager.sln.DotSettings'
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comment: never
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‎doc/dependency_decisions.yml‎

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:why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-messaging/raw/main/LICENSE)
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:versions:
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- 1.0.1
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- 1.0.3
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:when: 2023-29-08 21:43:10.781625468 Z
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- - :approve
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- Monai.Deploy.Messaging.RabbitMQ
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- :who: neildsouth
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:why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-messaging/raw/main/LICENSE)
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:versions:
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- 1.0.1
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- 1.0.3
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:when: 2023-29-08 21:43:20.975488411 Z
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- - :approve
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- Monai.Deploy.Security

‎src/Common/Configuration/Monai.Deploy.WorkflowManager.Common.Configuration.csproj‎

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</ItemGroup>
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<ItemGroup>
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<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.1" />
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<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.3" />
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<PackageReference Include="Monai.Deploy.Storage" Version="0.2.18" />
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</ItemGroup>
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‎src/Common/Configuration/packages.lock.json‎

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"net6.0": {
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"Monai.Deploy.Messaging": {
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"type": "Direct",
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"requested": "[1.0.1, )",
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"resolved": "1.0.1",
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"contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
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"requested": "[1.0.3, )",
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"resolved": "1.0.3",
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"contentHash": "DoQrTyztAGmOafiPNhxZ44D50Qcbqv4W94N9LxofyhW2NgSqMOKMbS+6FcomMsCKlLC1E3dyoYdZF8GFunwKUw==",
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"dependencies": {
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"Ardalis.GuardClauses": "4.1.1",
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"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",

‎src/Common/Miscellaneous/ApiControllerBase.cs‎

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*/
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using System.Net;
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using Ardalis.GuardClauses;
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using Microsoft.AspNetCore.Mvc;
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using Microsoft.Extensions.Options;
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using Monai.Deploy.WorkflowManager.Common.Miscellaneous.Wrappers;
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using Monai.Deploy.WorkflowManager.Common.Configuration;
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using Monai.Deploy.WorkflowManager.Common.Miscellaneous.Filter;
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using Monai.Deploy.WorkflowManager.Common.Miscellaneous.Services;
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[ApiController]
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public class ApiControllerBase : ControllerBase
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{
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public IOptions<WorkflowManagerOptions> Options { get; set; }
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/// <summary>
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/// Initializes a new instance of the <see cref="ApiControllerBase"/> class.
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/// </summary>
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/// <param name="options">Workflow manager options.</param>
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public ApiControllerBase(IOptions<WorkflowManagerOptions> options)
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public ApiControllerBase()
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{
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Options = options ?? throw new ArgumentNullException(nameof(options));
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}
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/// <summary>
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/// Gets internal Server Error 500.
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/// </summary>
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public static int InternalServerError => (int)HttpStatusCode.InternalServerError;
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protected static int InternalServerError => (int)HttpStatusCode.InternalServerError;
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/// <summary>
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/// Gets bad Request 400.
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/// </summary>
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public new static int BadRequest => (int)HttpStatusCode.BadRequest;
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protected static new int BadRequest => (int)HttpStatusCode.BadRequest;
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/// <summary>
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/// Gets notFound 404.
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/// </summary>
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public new static int NotFound => (int)HttpStatusCode.NotFound;
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/// <summary>
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/// Creates a pagination paged response.
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/// </summary>
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/// <typeparam name="T">Data set type.</typeparam>
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/// <param name="pagedData">Data set.</param>
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/// <param name="validFilter">Filters.</param>
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/// <param name="totalRecords">Total records.</param>
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/// <param name="uriService">Uri service.</param>
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/// <param name="route">Route.</param>
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/// <returns>Returns <see cref="PagedResponse{T}"/>.</returns>
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public PagedResponse<IEnumerable<T>> CreatePagedResponse<T>(IEnumerable<T> pagedData, PaginationFilter validFilter, long totalRecords, IUriService uriService, string route)
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{
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Guard.Against.Null(pagedData, nameof(pagedData));
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Guard.Against.Null(validFilter, nameof(validFilter));
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Guard.Against.Null(route, nameof(route));
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Guard.Against.Null(uriService, nameof(uriService));
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var pageSize = validFilter.PageSize ?? Options.Value.EndpointSettings.DefaultPageSize;
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var response = new PagedResponse<IEnumerable<T>>(pagedData, validFilter.PageNumber, pageSize);
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response.SetUp(validFilter, totalRecords, uriService, route);
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return response;
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}
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public StatsPagedResponse<IEnumerable<T>> CreateStatsPagedReponse<T>(IEnumerable<T> pagedData, PaginationFilter validFilter, long totalRecords, IUriService uriService, string route)
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{
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var response = new StatsPagedResponse<IEnumerable<T>>(pagedData, validFilter.PageNumber, validFilter.PageSize ?? 10);
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response.SetUp(validFilter, totalRecords, uriService, route);
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return response;
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}
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protected static new int NotFound => (int)HttpStatusCode.NotFound;
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}
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}

‎src/Common/Miscellaneous/ValidationConstants.cs‎

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};
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/// <summary>
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/// Key for the argo task type.
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/// </summary>
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public static readonly string ArgoTaskType = "argo";
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public const string ArgoTaskType = "argo";
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/// <summary>
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/// Key for the clinical review task type.
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/// </summary>
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public static readonly string ClinicalReviewTaskType = "aide_clinical_review";
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public const string ClinicalReviewTaskType = "aide_clinical_review";
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/// <summary>
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/// Key for the router task type.
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/// </summary>
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public static readonly string RouterTaskType = "router";
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public const string RouterTaskType = "router";
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/// <summary>
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/// Key for the export task type.
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/// </summary>
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public static readonly string ExportTaskType = "export";
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public const string ExportTaskType = "export";
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/// <summary>
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/// Key for the export task type.
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/// </summary>
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public static readonly string ExternalAppTaskType = "remote_app_execution";
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public const string ExternalAppTaskType = "remote_app_execution";
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/// <summary>
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/// Key for the export task type.
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/// </summary>
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public static readonly string DockerTaskType = "docker";
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public const string DockerTaskType = "docker";
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/// <summary>
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/// Key for the email task type.
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/// </summary>
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public static readonly string Email = "email";
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public const string Email = "email";
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public static readonly string[] AcceptableTasksToReview = { ArgoTaskType, ExternalAppTaskType };
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/// <summary>
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/// Valid task types.

‎src/Common/Miscellaneous/packages.lock.json‎

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},
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"Monai.Deploy.Messaging": {
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"type": "Transitive",
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"resolved": "1.0.1",
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"contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
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"resolved": "1.0.3",
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"contentHash": "DoQrTyztAGmOafiPNhxZ44D50Qcbqv4W94N9LxofyhW2NgSqMOKMbS+6FcomMsCKlLC1E3dyoYdZF8GFunwKUw==",
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"dependencies": {
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"Ardalis.GuardClauses": "4.1.1",
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"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
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"monai.deploy.workflowmanager.common.configuration": {
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"type": "Project",
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"dependencies": {
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"Monai.Deploy.Messaging": "[1.0.1, )",
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"Monai.Deploy.Messaging": "[1.0.3, )",
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"Monai.Deploy.Storage": "[0.2.18, )"
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}
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}

‎src/Monai.Deploy.WorkflowManager.sln.DotSettings‎

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<wpf:ResourceDictionary xml:space="preserve" xmlns:x="http://schemas.microsoft.com/winfx/2006/xaml" xmlns:s="clr-namespace:System;assembly=mscorlib" xmlns:ss="urn:shemas-jetbrains-com:settings-storage-xaml" xmlns:wpf="http://schemas.microsoft.com/winfx/2006/xaml/presentation">
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=AR/@EntryIndexedValue">AR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=AS/@EntryIndexedValue">AS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=ASMT/@EntryIndexedValue">ASMT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=AU/@EntryIndexedValue">AU</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=BDUS/@EntryIndexedValue">BDUS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=BI/@EntryIndexedValue">BI</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=BMD/@EntryIndexedValue">BMD</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=CD/@EntryIndexedValue">CD</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=CF/@EntryIndexedValue">CF</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=CP/@EntryIndexedValue">CP</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=CR/@EntryIndexedValue">CR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=CS/@EntryIndexedValue">CS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=CT/@EntryIndexedValue">CT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DD/@EntryIndexedValue">DD</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DF/@EntryIndexedValue">DF</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DG/@EntryIndexedValue">DG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DM/@EntryIndexedValue">DM</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DOC/@EntryIndexedValue">DOC</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DS/@EntryIndexedValue">DS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=DX/@EntryIndexedValue">DX</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=EC/@EntryIndexedValue">EC</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=ECG/@EntryIndexedValue">ECG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=EPS/@EntryIndexedValue">EPS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=ES/@EntryIndexedValue">ES</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=FA/@EntryIndexedValue">FA</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=FID/@EntryIndexedValue">FID</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=FS/@EntryIndexedValue">FS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=GM/@EntryIndexedValue">GM</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=HC/@EntryIndexedValue">HC</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=HD/@EntryIndexedValue">HD</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=IO/@EntryIndexedValue">IO</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=IOL/@EntryIndexedValue">IOL</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=IVOCT/@EntryIndexedValue">IVOCT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=IVUS/@EntryIndexedValue">IVUS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=KER/@EntryIndexedValue">KER</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=KO/@EntryIndexedValue">KO</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=LEN/@EntryIndexedValue">LEN</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=LP/@EntryIndexedValue">LP</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=LS/@EntryIndexedValue">LS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=MA/@EntryIndexedValue">MA</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=MG/@EntryIndexedValue">MG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=MR/@EntryIndexedValue">MR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=MS/@EntryIndexedValue">MS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=NM/@EntryIndexedValue">NM</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OAM/@EntryIndexedValue">OAM</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OCT/@EntryIndexedValue">OCT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OP/@EntryIndexedValue">OP</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OPM/@EntryIndexedValue">OPM</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OPR/@EntryIndexedValue">OPR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OPT/@EntryIndexedValue">OPT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OPV/@EntryIndexedValue">OPV</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OSS/@EntryIndexedValue">OSS</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=OT/@EntryIndexedValue">OT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=PLAN/@EntryIndexedValue">PLAN</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=PR/@EntryIndexedValue">PR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=PT/@EntryIndexedValue">PT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=PX/@EntryIndexedValue">PX</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=REG/@EntryIndexedValue">REG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RESP/@EntryIndexedValue">RESP</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RF/@EntryIndexedValue">RF</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RG/@EntryIndexedValue">RG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RTDOSE/@EntryIndexedValue">RTDOSE</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RTIMAGE/@EntryIndexedValue">RTIMAGE</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RTPLAN/@EntryIndexedValue">RTPLAN</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RTRECORD/@EntryIndexedValue">RTRECORD</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RTSTRUCT/@EntryIndexedValue">RTSTRUCT</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=RWV/@EntryIndexedValue">RWV</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=SEG/@EntryIndexedValue">SEG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=SM/@EntryIndexedValue">SM</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=SMR/@EntryIndexedValue">SMR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=SR/@EntryIndexedValue">SR</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=SRF/@EntryIndexedValue">SRF</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=ST/@EntryIndexedValue">ST</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=STAIN/@EntryIndexedValue">STAIN</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=TG/@EntryIndexedValue">TG</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=US/@EntryIndexedValue">US</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=VA/@EntryIndexedValue">VA</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=VF/@EntryIndexedValue">VF</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=XA/@EntryIndexedValue">XA</s:String>
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<s:String x:Key="/Default/CodeStyle/Naming/CSharpNaming/Abbreviations/=XC/@EntryIndexedValue">XC</s:String>
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</wpf:ResourceDictionary>

‎src/TaskManager/API/Monai.Deploy.WorkflowManager.TaskManager.API.csproj‎

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<ItemGroup>
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<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.1" />
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<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.3" />
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<PackageReference Include="Mongo.Migration" Version="3.1.4" />
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<PackageReference Include="MongoDB.Bson" Version="2.21.0" />
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</ItemGroup>

‎src/TaskManager/API/packages.lock.json‎

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"net6.0": {
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"Monai.Deploy.Messaging": {
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"type": "Direct",
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"requested": "[1.0.1, )",
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"resolved": "1.0.1",
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"contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
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"requested": "[1.0.3, )",
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"resolved": "1.0.3",
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"contentHash": "DoQrTyztAGmOafiPNhxZ44D50Qcbqv4W94N9LxofyhW2NgSqMOKMbS+6FcomMsCKlLC1E3dyoYdZF8GFunwKUw==",
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"dependencies": {
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"Ardalis.GuardClauses": "4.1.1",
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"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",

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