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Customizable search examples
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+38
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index.html

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<!doctype html>
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<html>
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<head>
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<title>RNAcentral sequence search example</title>
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<title>Sequence search</title>
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</head>
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<body>
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<p>
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The widget below searches miRBase, RefSeq, and PDBe data only.
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</p>
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<rnacentral-sequence-search databases='["pdbe", "mirbase", "refseq"]'/>
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<script type="text/javascript" src="/rnacentral-sequence-search-embed/dist/RNAcentral-sequence-search.js"></script></body>
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<rnacentral-sequence-search
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databases='["pdbe", "mirbase", "refseq"]'
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examples='[
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{"description": "miRNA hsa-let-7a-1", "urs": "URS000004F5D8", "sequence": "CUAUACAAUCUACUGUCUUUC"},
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{"description": "5S rRNA", "urs": "URS0000049E57", "sequence": "UGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU"},
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{"description": "NKILA lncRNA", "urs": "URS00008120E1", "sequence": "AGACCCGGCACCCGCGCAACGGAGGAGGGGCGCUGUGCCCUCUCCCCAACGGCGGUCAGCUUGGAACGCCUGCCCGGCGCACGCCCGGGGCCGGGGAGCCGAACUCGGUGCCAGCCGCACCCGGGCGGGUUGCUGGUGCGCCCUCCCCUCGCCCCCGUCCCUGGGGUCCUUGACCCAGGCUCUUGGGGCUAGCCUAUCUUCUGAGGAGCACAAGGUCCCUGGGGGCUCAGGGAAGAGAAAUUGGAGAAAGGGGGAGGAAGCCCCCAAGAUGGAUCACCCAUUGCCUGGUUUCGCAGGAGACUGUCCGCCUUCAGUUCUCCAGCAGCUCGGGGAUCAUGGCCCACUGAACCCCCAAGCGCUUUCACCCGAACCCAAGGAGGACGACCAGGAAAGACGGGAACUCGCGUAGACACGCCCGGAAGCCCUUGUCAUGUAAAUAGCUGUCGGGGACUGGUGUAUUGUCGCCGCCCCAGCCGGCGGGACCUGGGGCGAAUCCACACCCAUUGUCUGCUGCCCAAGGGGCCUCCGGCUGGGGGGCGCGGCUGCGGAGUUCAAAAGGGGUAUGAGCAGGAGGGGUGUACUUUUAGUUCAUUAAGUUUUAAUUACAGGAGUGCUACAAGAACACAUUCUUCAGGUUUAAAAAGAUAUUAAAAUAUUACAUAAGAGACCUCCCCUCCCUGGCCCACCUCCAGCCUCUUAAAAAUUUAGUGUGUCGCCUUUUAGACACUUUCUCAAAGCUUCACUUAUUUAACAGGCACUUAAGGAGCACCUACCUGUGCCAGAAACUCUCCAAAUAUUAACUCAACCUGACACCGACUCAGUGUGGCCGAAUAUUACUCUCCCCAUUUUACAGAGCGGGCAGCUGGUCAAGGAAGUCGCUUGUUGAAAGUCACACAGUGGUGGAGCCUGUGUGCCAACCCAGGACCCUGGGGAGCUGCCUCCCCCUCUCCCACGUAGUCCUGAUUCUUUAAGUGUCCACAUAUUCCUGUAAUGCCUGGAGUUUCAGUAAUUAGCAGGGACUUAGUGUGUUCAGAGAAAAAAAAAGCUUUUAAAAAUUAUUGUUACUGUGUUUGUAACAGUUUGGAUAGAGAAGGAAAAGCUGGAAUUUGGGAAGUGAAGGUGGCCUCGGGGUAGAACUUACCUAGACCAGAGCGAAUUCAUCCUGAAGAACUCAGAGAAAGCCGGUGCAGGAAGUGGGUUCCCGCUCUCCCUGCACAGGCACAGUGAUGCUGCCAGAGCUCUCCCAGAAAGACCAGGAGGCUUGUUCUGGAGAAGUCAAGCCCAGGGAUGUGGCUCAGGCUGGUCCAAGCUCUUUGGAGGAGUCCAAGCGUGCCCAGCCCAGAGGGAGGUUCAGAGGCACUGACCGUCUUCUGUUUGGGAGGAGAAGCUCACUCUUGGAGCCACAGCCAGCACUAGGUCAGGACCCAGGCCCCGGCCCAGGAGUGGGGCAAUACCCAGCGUCUACCCCAGAUGGCACCCUGCUGUGAACUGGGCGCCCUCAGCCCCUGCCUUGAGGAAGGGGCAAUACCACCAGCGUGUCUUUUAUCAGGGAAGAUAUUGCUGCAGUUUGGCCGCUGCAACUUAAGAGAAAAGCUAAGGGGUCCCCCAGCAUCCCUUGGGGUGCCACUGCAAAUACUGGCUGGGCCUGGAGAUGACCUGGGUCCCAUUCACUUCCUAGGGUGAAGGAGGUCAUCAUUACCACCCCUGCUUUCAGCCAUUUCUUCAUUCAUUCAAUCAACAAACUGGCUGAGCUGCAACCCUGAGCCGGGGAAUUCAGCCACUCCAGACACAGCCCCUGCCCUCCGGGAAGUCUCGGGAGACCUGGCUAGUCUGGCUGGGAGAAGUCACACGUUGAUUGUCUUGGAAGUGAGAUGGCAUUUACACAAUGGAGGCUGCACUGCCAGCAGGCAAAAAUAACCAGUUAAUUCAGUGGCUUAAAGAAACCAAACCUACCCACAACGCUUGACCUCCCAUUGAUCCAUCUGCGACACCGGCAGUGGCUACCAUUUAUUGAGUGCUGAUGGUGUCACCUGGGAUUGACUUAGUGGUCUCUGGCGCUAGUUCCGAAGUUGAUUCUGUCUGGAGAGCUUAAUGCAGUGUUCAGACCUCAGGGUCCGAACCUGAGGGUCACCCAAAGAUGAGUGGGACAUAGCUGUGUGACCUCGGCUGAGUGCUUUCACCUCUCCAACCUCAGUUUCCUCUUCUGCAAAAUGGGGUGGCUUCAUGGCACCUUCACGUGGUGUGAUUGCGAGGAAUGAAGGGAUCGAUGCCUUGCAAGUAGAGGAGAAGGGGCCGGAUACAUCUUAGUUGUUAUGUUAUUUAAUCAUCUUGGCAACCCCGGGAGGGAGGAACCACUAUCAUUUUAUUUUCCAUUUUGCAGUUGAGGACAAUGAUGAUUCCAGCACAGACAGGGCCCCUGACGGGGCAGUAGGAAAGGAGAAUUGCUUUGGAAGGAGCAUAGGCUGGACUGCCAGCACUCAUAGGAGGCUUCGUGUGUGCCCAGGACUGCGAGAAUUAAAUACAGGACACCCAGUUCAGUUUGAAUUUCAGAUAAACUAUGAAUAAUGAUUAGUGUAAGUAUAUCUCAAUUUAACUGGAAAAAAAAAAAAAAAAAA"}
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]'
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/>
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<script type="text/javascript" src="/rnacentral-sequence-search-embed/dist/RNAcentral-sequence-search.js"></script>
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</body>
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</html>

src/app.jsx

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@@ -29,6 +29,7 @@ class RNAcentralSequenceSearch extends HTMLElement {
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// parse arguments
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const databases = JSON.parse(this.attributes.databases.nodeValue);
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const examples = JSON.parse(this.attributes.examples ? this.attributes.examples.nodeValue : null);
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// render React
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ReactDOM.render([
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<style key={resultsStyles} dangerouslySetInnerHTML={{__html: resultsStyles}}/>,
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<body key='body'>
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<Provider key='provider' store={store}>
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<SequenceSearch databases={databases}/>
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<SequenceSearch databases={databases} examples={examples}/>
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</Provider>
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</body>
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],

src/containers/SequenceSearch/components/SearchForm/index.jsx

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@@ -27,6 +27,17 @@ class SearchForm extends React.Component {
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}
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}
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showExamples(){
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const examples = this.props.examples;
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return examples.map(example =>
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<div key={example.urs} style={{marginLeft: '10px'}}>
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<label>
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- <a onClick={() => this.props.onExampleSequence(example.sequence)}>{example.description}</a>
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<small> ({example.urs})</small>
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</label>
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</div>)
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}
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render() {
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return (
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<div className="row">
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<form onSubmit={(e) => this.onSubmit(e)}>
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<div>
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<fieldset>
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<h4>RNA sequence:</h4>
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<p>
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<label>
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Examples: <a onClick={ e => this.props.onExampleSequence("CUAUACAAUCUACUGUCUUUC") }>miRNA hsa-let-7a-1</a> <small>(URS000004F5D8)</small>, <a onClick={ e => this.props.onExampleSequence("UGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU") }> 5S rRNA</a> <small>(URS0000049E57)</small>, <a onClick={ e => this.props.onExampleSequence("AGACCCGGCACCCGCGCAACGGAGGAGGGGCGCUGUGCCCUCUCCCCAACGGCGGUCAGCUUGGAACGCCUGCCCGGCGCACGCCCGGGGCCGGGGAGCCGAACUCGGUGCCAGCCGCACCCGGGCGGGUUGCUGGUGCGCCCUCCCCUCGCCCCCGUCCCUGGGGUCCUUGACCCAGGCUCUUGGGGCUAGCCUAUCUUCUGAGGAGCACAAGGUCCCUGGGGGCUCAGGGAAGAGAAAUUGGAGAAAGGGGGAGGAAGCCCCCAAGAUGGAUCACCCAUUGCCUGGUUUCGCAGGAGACUGUCCGCCUUCAGUUCUCCAGCAGCUCGGGGAUCAUGGCCCACUGAACCCCCAAGCGCUUUCACCCGAACCCAAGGAGGACGACCAGGAAAGACGGGAACUCGCGUAGACACGCCCGGAAGCCCUUGUCAUGUAAAUAGCUGUCGGGGACUGGUGUAUUGUCGCCGCCCCAGCCGGCGGGACCUGGGGCGAAUCCACACCCAUUGUCUGCUGCCCAAGGGGCCUCCGGCUGGGGGGCGCGGCUGCGGAGUUCAAAAGGGGUAUGAGCAGGAGGGGUGUACUUUUAGUUCAUUAAGUUUUAAUUACAGGAGUGCUACAAGAACACAUUCUUCAGGUUUAAAAAGAUAUUAAAAUAUUACAUAAGAGACCUCCCCUCCCUGGCCCACCUCCAGCCUCUUAAAAAUUUAGUGUGUCGCCUUUUAGACACUUUCUCAAAGCUUCACUUAUUUAACAGGCACUUAAGGAGCACCUACCUGUGCCAGAAACUCUCCAAAUAUUAACUCAACCUGACACCGACUCAGUGUGGCCGAAUAUUACUCUCCCCAUUUUACAGAGCGGGCAGCUGGUCAAGGAAGUCGCUUGUUGAAAGUCACACAGUGGUGGAGCCUGUGUGCCAACCCAGGACCCUGGGGAGCUGCCUCCCCCUCUCCCACGUAGUCCUGAUUCUUUAAGUGUCCACAUAUUCCUGUAAUGCCUGGAGUUUCAGUAAUUAGCAGGGACUUAGUGUGUUCAGAGAAAAAAAAAGCUUUUAAAAAUUAUUGUUACUGUGUUUGUAACAGUUUGGAUAGAGAAGGAAAAGCUGGAAUUUGGGAAGUGAAGGUGGCCUCGGGGUAGAACUUACCUAGACCAGAGCGAAUUCAUCCUGAAGAACUCAGAGAAAGCCGGUGCAGGAAGUGGGUUCCCGCUCUCCCUGCACAGGCACAGUGAUGCUGCCAGAGCUCUCCCAGAAAGACCAGGAGGCUUGUUCUGGAGAAGUCAAGCCCAGGGAUGUGGCUCAGGCUGGUCCAAGCUCUUUGGAGGAGUCCAAGCGUGCCCAGCCCAGAGGGAGGUUCAGAGGCACUGACCGUCUUCUGUUUGGGAGGAGAAGCUCACUCUUGGAGCCACAGCCAGCACUAGGUCAGGACCCAGGCCCCGGCCCAGGAGUGGGGCAAUACCCAGCGUCUACCCCAGAUGGCACCCUGCUGUGAACUGGGCGCCCUCAGCCCCUGCCUUGAGGAAGGGGCAAUACCACCAGCGUGUCUUUUAUCAGGGAAGAUAUUGCUGCAGUUUGGCCGCUGCAACUUAAGAGAAAAGCUAAGGGGUCCCCCAGCAUCCCUUGGGGUGCCACUGCAAAUACUGGCUGGGCCUGGAGAUGACCUGGGUCCCAUUCACUUCCUAGGGUGAAGGAGGUCAUCAUUACCACCCCUGCUUUCAGCCAUUUCUUCAUUCAUUCAAUCAACAAACUGGCUGAGCUGCAACCCUGAGCCGGGGAAUUCAGCCACUCCAGACACAGCCCCUGCCCUCCGGGAAGUCUCGGGAGACCUGGCUAGUCUGGCUGGGAGAAGUCACACGUUGAUUGUCUUGGAAGUGAGAUGGCAUUUACACAAUGGAGGCUGCACUGCCAGCAGGCAAAAAUAACCAGUUAAUUCAGUGGCUUAAAGAAACCAAACCUACCCACAACGCUUGACCUCCCAUUGAUCCAUCUGCGACACCGGCAGUGGCUACCAUUUAUUGAGUGCUGAUGGUGUCACCUGGGAUUGACUUAGUGGUCUCUGGCGCUAGUUCCGAAGUUGAUUCUGUCUGGAGAGCUUAAUGCAGUGUUCAGACCUCAGGGUCCGAACCUGAGGGUCACCCAAAGAUGAGUGGGACAUAGCUGUGUGACCUCGGCUGAGUGCUUUCACCUCUCCAACCUCAGUUUCCUCUUCUGCAAAAUGGGGUGGCUUCAUGGCACCUUCACGUGGUGUGAUUGCGAGGAAUGAAGGGAUCGAUGCCUUGCAAGUAGAGGAGAAGGGGCCGGAUACAUCUUAGUUGUUAUGUUAUUUAAUCAUCUUGGCAACCCCGGGAGGGAGGAACCACUAUCAUUUUAUUUUCCAUUUUGCAGUUGAGGACAAUGAUGAUUCCAGCACAGACAGGGCCCCUGACGGGGCAGUAGGAAAGGAGAAUUGCUUUGGAAGGAGCAUAGGCUGGACUGCCAGCACUCAUAGGAGGCUUCGUGUGUGCCCAGGACUGCGAGAAUUAAAUACAGGACACCCAGUUCAGUUUGAAUUUCAGAUAAACUAUGAAUAAUGAUUAGUGUAAGUAUAUCUCAAUUUAACUGGAAAAAAAAAAAAAAAAAA") }>NKILA lncRNA</a> <small>(URS00008120E1)</small> | <a id="clearSequence" onClick={ this.props.onClearSequence }>Clear sequence</a>
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</label>
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</p>
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<div>Examples:</div>
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{this.showExamples()}
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<textarea id="sequence" name="sequence" rows="7" value={this.props.sequence} onChange={(e) => this.props.onSequenceTextareaChange(e)} />
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<p>
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Or upload a file (with ".fasta" extension):
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<div>
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<fieldset>
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<div id="jd_submitButtonPanel">
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<input name="submit" type="submit" value="Submit" className="button" />
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<input name="submit" type="submit" value="Submit" className="button" />{' '}
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<input name="clear" type="submit" value="Clear sequence" className="button" style={{background: '#6c757d'}} onClick={ this.props.onClearSequence } />
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</div>
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</fieldset>
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</div>

src/containers/SequenceSearch/index.jsx

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render() {
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return [
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<SearchForm key={`searchForm`} databases={this.props.databases} />,
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<SearchForm key={`searchForm`} databases={this.props.databases} examples={this.props.examples} />,
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<Results key={`results`} />
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]
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}

src/index.html

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<!doctype html>
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<html>
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<head>
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<title>RNAcentral sequence search example</title>
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<title>Sequence search</title>
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</head>
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<body>
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<p>
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The widget below searches miRBase, RefSeq, and PDBe data only.
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</p>
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<rnacentral-sequence-search databases='["pdbe", "mirbase", "refseq"]'/>
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<rnacentral-sequence-search
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databases='["pdbe", "mirbase", "refseq"]'
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examples='[
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{"description": "miRNA hsa-let-7a-1", "urs": "URS000004F5D8", "sequence": "CUAUACAAUCUACUGUCUUUC"},
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{"description": "5S rRNA", "urs": "URS0000049E57", "sequence": "UGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU"},
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{"description": "NKILA lncRNA", "urs": "URS00008120E1", "sequence": "AGACCCGGCACCCGCGCAACGGAGGAGGGGCGCUGUGCCCUCUCCCCAACGGCGGUCAGCUUGGAACGCCUGCCCGGCGCACGCCCGGGGCCGGGGAGCCGAACUCGGUGCCAGCCGCACCCGGGCGGGUUGCUGGUGCGCCCUCCCCUCGCCCCCGUCCCUGGGGUCCUUGACCCAGGCUCUUGGGGCUAGCCUAUCUUCUGAGGAGCACAAGGUCCCUGGGGGCUCAGGGAAGAGAAAUUGGAGAAAGGGGGAGGAAGCCCCCAAGAUGGAUCACCCAUUGCCUGGUUUCGCAGGAGACUGUCCGCCUUCAGUUCUCCAGCAGCUCGGGGAUCAUGGCCCACUGAACCCCCAAGCGCUUUCACCCGAACCCAAGGAGGACGACCAGGAAAGACGGGAACUCGCGUAGACACGCCCGGAAGCCCUUGUCAUGUAAAUAGCUGUCGGGGACUGGUGUAUUGUCGCCGCCCCAGCCGGCGGGACCUGGGGCGAAUCCACACCCAUUGUCUGCUGCCCAAGGGGCCUCCGGCUGGGGGGCGCGGCUGCGGAGUUCAAAAGGGGUAUGAGCAGGAGGGGUGUACUUUUAGUUCAUUAAGUUUUAAUUACAGGAGUGCUACAAGAACACAUUCUUCAGGUUUAAAAAGAUAUUAAAAUAUUACAUAAGAGACCUCCCCUCCCUGGCCCACCUCCAGCCUCUUAAAAAUUUAGUGUGUCGCCUUUUAGACACUUUCUCAAAGCUUCACUUAUUUAACAGGCACUUAAGGAGCACCUACCUGUGCCAGAAACUCUCCAAAUAUUAACUCAACCUGACACCGACUCAGUGUGGCCGAAUAUUACUCUCCCCAUUUUACAGAGCGGGCAGCUGGUCAAGGAAGUCGCUUGUUGAAAGUCACACAGUGGUGGAGCCUGUGUGCCAACCCAGGACCCUGGGGAGCUGCCUCCCCCUCUCCCACGUAGUCCUGAUUCUUUAAGUGUCCACAUAUUCCUGUAAUGCCUGGAGUUUCAGUAAUUAGCAGGGACUUAGUGUGUUCAGAGAAAAAAAAAGCUUUUAAAAAUUAUUGUUACUGUGUUUGUAACAGUUUGGAUAGAGAAGGAAAAGCUGGAAUUUGGGAAGUGAAGGUGGCCUCGGGGUAGAACUUACCUAGACCAGAGCGAAUUCAUCCUGAAGAACUCAGAGAAAGCCGGUGCAGGAAGUGGGUUCCCGCUCUCCCUGCACAGGCACAGUGAUGCUGCCAGAGCUCUCCCAGAAAGACCAGGAGGCUUGUUCUGGAGAAGUCAAGCCCAGGGAUGUGGCUCAGGCUGGUCCAAGCUCUUUGGAGGAGUCCAAGCGUGCCCAGCCCAGAGGGAGGUUCAGAGGCACUGACCGUCUUCUGUUUGGGAGGAGAAGCUCACUCUUGGAGCCACAGCCAGCACUAGGUCAGGACCCAGGCCCCGGCCCAGGAGUGGGGCAAUACCCAGCGUCUACCCCAGAUGGCACCCUGCUGUGAACUGGGCGCCCUCAGCCCCUGCCUUGAGGAAGGGGCAAUACCACCAGCGUGUCUUUUAUCAGGGAAGAUAUUGCUGCAGUUUGGCCGCUGCAACUUAAGAGAAAAGCUAAGGGGUCCCCCAGCAUCCCUUGGGGUGCCACUGCAAAUACUGGCUGGGCCUGGAGAUGACCUGGGUCCCAUUCACUUCCUAGGGUGAAGGAGGUCAUCAUUACCACCCCUGCUUUCAGCCAUUUCUUCAUUCAUUCAAUCAACAAACUGGCUGAGCUGCAACCCUGAGCCGGGGAAUUCAGCCACUCCAGACACAGCCCCUGCCCUCCGGGAAGUCUCGGGAGACCUGGCUAGUCUGGCUGGGAGAAGUCACACGUUGAUUGUCUUGGAAGUGAGAUGGCAUUUACACAAUGGAGGCUGCACUGCCAGCAGGCAAAAAUAACCAGUUAAUUCAGUGGCUUAAAGAAACCAAACCUACCCACAACGCUUGACCUCCCAUUGAUCCAUCUGCGACACCGGCAGUGGCUACCAUUUAUUGAGUGCUGAUGGUGUCACCUGGGAUUGACUUAGUGGUCUCUGGCGCUAGUUCCGAAGUUGAUUCUGUCUGGAGAGCUUAAUGCAGUGUUCAGACCUCAGGGUCCGAACCUGAGGGUCACCCAAAGAUGAGUGGGACAUAGCUGUGUGACCUCGGCUGAGUGCUUUCACCUCUCCAACCUCAGUUUCCUCUUCUGCAAAAUGGGGUGGCUUCAUGGCACCUUCACGUGGUGUGAUUGCGAGGAAUGAAGGGAUCGAUGCCUUGCAAGUAGAGGAGAAGGGGCCGGAUACAUCUUAGUUGUUAUGUUAUUUAAUCAUCUUGGCAACCCCGGGAGGGAGGAACCACUAUCAUUUUAUUUUCCAUUUUGCAGUUGAGGACAAUGAUGAUUCCAGCACAGACAGGGCCCCUGACGGGGCAGUAGGAAAGGAGAAUUGCUUUGGAAGGAGCAUAGGCUGGACUGCCAGCACUCAUAGGAGGCUUCGUGUGUGCCCAGGACUGCGAGAAUUAAAUACAGGACACCCAGUUCAGUUUGAAUUUCAGAUAAACUAUGAAUAAUGAUUAGUGUAAGUAUAUCUCAAUUUAACUGGAAAAAAAAAAAAAAAAAA"}
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]'
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/>
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</body>
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</html>

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