Skip to content

CNV offsets by one in makeCNVcalls. #44

@wcarre

Description

@wcarre

After having used the v1 for a long time, I coud not retrieve the CNVs after installing DECoN v2.

I first corrected the script IdentifyFailures.R as mention in the issue #40.
but in the next script makeCNVcalls.R there is actually the same issue.
Ligne 69:
colnames(ExomeCount)[1:length(sample.names)+4]=sample.names
it should be
colnames(ExomeCount)[1:length(sample.names)+5]=sample.names

Otherwise all the samples / CNV are offsets.

It would be great to fix both of these issues in the git.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions