Retrieved anatomical reference mask
Use standard template as functional scan reference.
Calculate the anatomical dice score.
0%| | 0/5 [00:00<?, ?it/s]
Traceback (most recent call last):
File "/lustre03/project/6003287/bpinsard/.virtualenvs/neuromod_data3.10/bin/giga_auto_qc", line 8, in <module>
sys.exit(main())
File "/lustre03/project/6003287/bpinsard/.virtualenvs/neuromod_data3.10/lib/python3.10/site-packages/giga_auto_qc/run.py", line 83, in main
workflow(args)
File "/lustre03/project/6003287/bpinsard/.virtualenvs/neuromod_data3.10/lib/python3.10/site-packages/giga_auto_qc/workflow.py", line 69, in workflow
anatomical_metrics = assessments.calculate_anat_metrics(
File "/lustre03/project/6003287/bpinsard/.virtualenvs/neuromod_data3.10/lib/python3.10/site-packages/giga_auto_qc/assessments.py", line 351, in calculate_anat_metrics
anat_dice = _dice_coefficient(anat_image[0], reference_masks["anat"])
IndexError: list index out of range
