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| 1 | +# python-sscha Installation Guide |
| 2 | + |
| 3 | +This guide provides step-by-step instructions to compile and install the *sscha* library. The project uses the Meson build system to compile C and Fortran extensions for Python. |
| 4 | + |
| 5 | +## Recommended Installation: Conda / Mamba |
| 6 | + |
| 7 | +The easiest and most reproducible way to install *python-sscha* is by using a Conda environment. We strongly recommend using *micromamba* or *mamba* as they are significantly faster. This method installs all the required compilers, libraries, and Python packages inside an isolated environment, avoiding the need to modify your base system. |
| 8 | + |
| 9 | +### Step 1: Create and Activate the Environment |
| 10 | + |
| 11 | +1. Install Conda/Mamba. If you don't have it, we recommend installing *micromamba*. |
| 12 | + |
| 13 | +2. Create the environment. Open your terminal and run the following command. It will create a new environment named *sscha* with all the necessary dependencies, including *CellConstructor*. |
| 14 | + |
| 15 | +```bash |
| 16 | +micromamba create -n sscha python=3.12 gfortran libblas lapack openmpi openmpi-mpicc pkg-config pip numpy scipy spglib=2.2 cellconstructor matplotlib ase |
| 17 | +``` |
| 18 | + |
| 19 | +* Python Version: We use Python 3.12. Newer versions are not yet supported due to a dependency constraint from *spglib <= 2.2*. |
| 20 | + |
| 21 | +* pkg-config: This package is essential. Meson requires it to correctly detect the BLAS and LAPACK libraries provided by Conda. |
| 22 | + |
| 23 | +3. Activate the environment. You must activate the environment before proceeding. |
| 24 | + |
| 25 | +```bash |
| 26 | +micromamba activate sscha |
| 27 | +``` |
| 28 | + |
| 29 | +### Step 2: Clone the Repository (if not done) |
| 30 | + |
| 31 | +If you don't have the source code locally, clone it from the repository. |
| 32 | + |
| 33 | +```bash |
| 34 | +git clone https://github.com/SSCHAcode/python-sscha.git |
| 35 | +cd python-sscha |
| 36 | +``` |
| 37 | + |
| 38 | +### Step 3: Install python-sscha |
| 39 | + |
| 40 | +With the environment active, install the package using *pip*. *pip* will automatically use Meson to compile and install the project. |
| 41 | + |
| 42 | +```bash |
| 43 | +pip install . |
| 44 | +``` |
| 45 | + |
| 46 | +The installation is now complete! You can verify it by running the tests or importing the modules in Python. |
| 47 | + |
| 48 | +## Advanced Installation: Manual Configuration |
| 49 | + |
| 50 | +This section is for users who cannot use Conda or need to configure the build with specific compilers or options. |
| 51 | + |
| 52 | +### Prerequisites |
| 53 | + |
| 54 | +* A C and Fortran compiler. |
| 55 | + |
| 56 | +* Python 3.12 and pip. |
| 57 | + |
| 58 | +* Ninja and Meson: *pip install meson ninja*. |
| 59 | + |
| 60 | +* System libraries for BLAS, LAPACK, and MPI. |
| 61 | + |
| 62 | +* All Python dependencies, including CellConstructor, must be installed in your environment. |
| 63 | + |
| 64 | +### Method 1: Using Environment Variables |
| 65 | + |
| 66 | +You can specify compilers by setting the *CC* (C compiler) and *FC* (Fortran compiler) environment variables before running *pip*. |
| 67 | + |
| 68 | +```bash |
| 69 | +# Example using compilers from a specific toolchain |
| 70 | +export CC=/usr/local/bin/gcc-11 |
| 71 | +export FC=/usr/local/bin/gfortran-11 |
| 72 | + |
| 73 | +# Install the project |
| 74 | +pip install . |
| 75 | +``` |
| 76 | + |
| 77 | +### Method 2: Using a Meson Cross File |
| 78 | + |
| 79 | +For a reproducible setup, define your compilers in a file (e.g., *native-toolchain.ini*). |
| 80 | + |
| 81 | +Example *native-toolchain.ini*: |
| 82 | + |
| 83 | +```bash |
| 84 | +[binaries] |
| 85 | +c = '/path/to/my/custom/gcc' |
| 86 | +fortran = '/path/to/my/custom/gfortran' |
| 87 | +``` |
| 88 | + |
| 89 | +Then, install by passing this file to Meson via *pip*: |
| 90 | + |
| 91 | +```bash |
| 92 | +pip install . --config-settings=meson-args="--native-file=native-toolchain.ini" |
| 93 | +``` |
| 94 | + |
| 95 | +## Build Options |
| 96 | + |
| 97 | +You can pass options to Meson to customize the build. |
| 98 | + |
| 99 | +* Create a debug build: |
| 100 | + |
| 101 | +```bash |
| 102 | +pip install . --config-settings=meson-args="-Dbuildtype=debug" |
| 103 | +``` |
| 104 | + |
| 105 | +* Enable Intel MKL (requires MKL to be installed and findable by your system): |
| 106 | + |
| 107 | +```bash |
| 108 | +pip install . --config-settings=meson-args="-Duse_mkl=true" |
| 109 | +``` |
| 110 | + |
| 111 | +* Combine multiple options: |
| 112 | + |
| 113 | +```bash |
| 114 | +pip install . --config-settings=meson-args="-Dbuildtype=debug,-Duse_mkl=true" |
| 115 | +``` |
| 116 | + |
| 117 | +## Reconfiguring a Build |
| 118 | + |
| 119 | +If you need to change build options, it is best to perform a clean installation. |
| 120 | + |
| 121 | +```bash |
| 122 | +# 1. Uninstall the package |
| 123 | +pip uninstall python-sscha |
| 124 | + |
| 125 | +# 2. (Optional but recommended) Remove the build directory |
| 126 | +rm -rf build/ |
| 127 | + |
| 128 | +# 3. Reinstall with the new options |
| 129 | +pip install . --config-settings=meson-args="-Dnew_option=value" |
| 130 | +``` |
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