diff --git a/README.md b/README.md index 6d2ce05..1ecbdb0 100644 --- a/README.md +++ b/README.md @@ -22,6 +22,21 @@ This DSA plugin allows users to run image analysis jobs through the HistomicsUI 6. Once the job sucessfuly runs, the segmented compartments will appear on top of the image. You can visuazlie them all or one-by-one by selecting the layers you wish to view from Annotations/Other tab on the right. + + +7. You can navigate through the slide and visualize an particular region and annotation by zooming in and out. + + + +### Feature extraction + +1. Once the image is annotated, morphometric features can be extracted for glomerulus, sclerotic glomerulus, tubule, and artery/arteriole layers by running the `FeatureExtraction` plugin. + + + +2. After the job is run, an excel spreadsheet will be created in the user's private directory with extracted features as shown below. + + # See Also diff --git a/figures/fig2.png b/figures/fig2.png index 89d1a20..14451c5 100644 Binary files a/figures/fig2.png and b/figures/fig2.png differ diff --git a/figures/fig4.png b/figures/fig4.png new file mode 100644 index 0000000..b123d47 Binary files /dev/null and b/figures/fig4.png differ diff --git a/figures/fig5.png b/figures/fig5.png new file mode 100644 index 0000000..e095da1 Binary files /dev/null and b/figures/fig5.png differ diff --git a/figures/fig6.png b/figures/fig6.png new file mode 100644 index 0000000..215535f Binary files /dev/null and b/figures/fig6.png differ diff --git a/figures/fig7.png b/figures/fig7.png new file mode 100644 index 0000000..08fdaa6 Binary files /dev/null and b/figures/fig7.png differ