Video button

[payamghiaci]

An icon to produce video of decided colonies is very appreciated otherwise I think this very valuable option will be overlooked by the user.

[local-minimum]

Please include examples of the specific video links you would like to have included.

[payamghiaci]

Sth like this:
Colony (row: 6, column: 20) > Time (0 hrs to 72 hrs) > Export video
Resulting in:
https://drive.google.com/open?id=0B4lI1gJY_OvTV1dib2JIWEhzLW8

[local-minimum]

The /api/results/curves request if given a plate, row and col will return film_urls ready to use.

Else use /api/results/movie/make/<film_type>/<int:plate>/<int:outer_dim>/<int:inner_dim>/<path:project> directly.

This will not enable limiting the time as Payam suggested, but will give you the basic film creation.

[local-minimum]

<film_type> can be one of the following strings colony, detection, 3d.

[Erlor]

When I run this code :

analysis_results.animate_colony_growth(save_target='0_30_44.avi', position=(0,30,44), project_compilation=os.path.abspath('H2O_vs_D2O_130217_Scanner_1.project.compilation'), analysis_folder=os.path.abspath('analysis'))

I get the following message:

/home/kmb/.local/lib/python2.7/site-packages/scanomatic/qc/analysis_results.pyc in animate_colony_growth(save_target, position, analysis_folder, fps, project_compilation, fig, cmap, colony_title, positioning)
94 times, images, _ = load_colony_images_for_animation(analysis_folder, position,
95 project_compilation=project_compilation,
---> 96 positioning=positioning)
97
98 if fig is None:

/home/kmb/.local/lib/python2.7/site-packages/scanomatic/io/image_loading.pyc in load_colony_images_for_animation(analysis_directory, position, project_compilation, positioning)
159
160 images[..., i] = load_colony_image(position, grid=grid, grid_size=grid_size, compilation_result=entry,
--> 161 experiment_directory=experiment_directory)
162
163 return times, images, im

/home/kmb/.local/lib/python2.7/site-packages/scanomatic/io/image_loading.pyc in load_colony_image(position, compilation_result, analysis_directory, time_index, compilation_file_name, experiment_directory, grid, grid_size)
108 im = im[y[0]: y[1], x[0]: x[1]][:, ::-1]
109
--> 110 return slice_im(im, grid[:, grid.shape[1] - position[2] - 1, position[1]], grid_size)
111
112

/home/kmb/.local/lib/python2.7/site-packages/scanomatic/io/image_loading.pyc in slice_im(plate_im, colony_position, colony_size)
67 ubound += colony_size - (ubound - lbound)
68
---> 69 return plate_im[lbound[0]: ubound[0], lbound[1]: ubound[1]]
70
71

TypeError: slice indices must be integers or None or have an index method