local/non-cluster profile

[Maarten-vd-Sande]

While playing around with cookiecutter I made a 'local' profile. I'm not sure about how useful it is, but since I made it, why not let you decide:

cookiecutter.json

{
  "profile_name": null,
  "cores":        null,
  "resources":    "",
  "config":       "",
  "conda":        ["True", "False"],
  "singularity":  ["True", "False"],
  "keep_going":   ["True", "False"],
  "additional":   ""
}

{{cookiecutter.profile_name}}/config.yaml

# execution
cores: {{cookiecutter.cores}}
{% if cookiecutter.resources|length -%}
resources:
{%- for keyval in cookiecutter.resources.replace(' ', '').split(',') -%}
{% set key, value = keyval.replace(':', '=').split('=') %}
  - {{key}}: {{value}}
{%- endfor %}
{%- endif %}
{% if cookiecutter.config|length -%}
config:
{%- for keyval in cookiecutter.config.replace(' ', '').split(',') -%}
{% set key, value = keyval.replace(':', '=').split('=') %}
  - {{key}}: {{value}}
{%- endfor %}
{%- endif %}
keep-going: {{cookiecutter.keep_going}}


# environment
use-conda: {{cookiecutter.conda}}
use-singularity: {{cookiecutter.singularity}}


{% if cookiecutter.additional|length -%}
# additional options
{%- for keyval in cookiecutter.additional.replace(' ', '').split(',') -%}
{% set key, value = keyval.replace(':', '=').split('=') %}
{{key}}: {{value}}
{%- endfor %}
{%- endif %}

example result:

# execution
cores: 46
resources:
  - parallel_downloads: 1
  - mem_gb: 64
config:
  - ascp_path: $HOME/.aspera/connect/bin/ascp
  - ascp_key: $HOME/.aspera/connect/etc/asperaweb_id_dsa.openssh
keep-going: True


# environment
use-conda: True
use-singularity: False


# additional options
force: True
summary: True