TODO list

[huangyh09]

TODO list July 2025

Urgent

• Add prediction notebook, e.g., using hEmbryo 6 datasets to predict the Xiang dataset
• Confirm we are OK with the current release repo, and make a release on PyPI [YH can help]
• Generate basic readthedocs [YH can help]

Should do soon

• implement simplified tvae.tl.train(), tvae.tl.predict(), and tvae.tl.crossvalidate(); work from tools/_training.py
• Any possibility to further reduce the data file size in Zenodo, as we have it as built-in datasets, e.g., TemporalVAE.datasets.hEmbryo8()

[huangyh09]

@awa121, please watch (click the watch button above) the release repo and the reproducibility repo.

[EddieLv]

Excellent work! When can I apply your tools on my study? About 24 Spatial Transcriptomic datasets, covering 10 timepoints.

[EddieLv]

@huangyh09 @awa121