From c2c432b4692c8c6af6265c7692b4d897f6099292 Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Wed, 3 Sep 2025 20:05:30 -0700 Subject: [PATCH 1/5] test coverage --- R/qval.R | 1 + 1 file changed, 1 insertion(+) diff --git a/R/qval.R b/R/qval.R index f8cedd4..7602fbb 100644 --- a/R/qval.R +++ b/R/qval.R @@ -1,4 +1,5 @@ # +# #' These functions calculate the q-values corresponding to a given set of p-values, directly copy without modification from https://github.com/StoreyLab/qvalue. #' It is implemented under the LGPL license (https://github.com/StoreyLab/qvalue/blob/master/DESCRIPTION) #' The functions are marked as internal, meaning it is not meant to be exported for external use. From 35ade35b0b60b0955b02b9f9348912fe5ff6268e Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Wed, 3 Sep 2025 20:27:25 -0700 Subject: [PATCH 2/5] test coverage --- .github/workflows/ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1099a8d..db9779e 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -11,8 +11,8 @@ jobs: ci_linux-64: name: linux-64 CI runs-on: ubuntu-latest - env: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} + # env: + # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} strategy: fail-fast: false matrix: From 4bc081156e49065542c9b56e05ff2330afbc308d Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Wed, 3 Sep 2025 20:51:00 -0700 Subject: [PATCH 3/5] test coverage --- .github/workflows/ci.yml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index db9779e..e2b45f7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -11,8 +11,9 @@ jobs: ci_linux-64: name: linux-64 CI runs-on: ubuntu-latest - # env: - # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} strategy: fail-fast: false matrix: From 229fff3089e97fe3e32ef26470edba7b079dae8a Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Thu, 4 Sep 2025 10:47:30 -0700 Subject: [PATCH 4/5] test commit --- R/qval.R | 1 + 1 file changed, 1 insertion(+) diff --git a/R/qval.R b/R/qval.R index 7602fbb..695264d 100644 --- a/R/qval.R +++ b/R/qval.R @@ -1,5 +1,6 @@ # # +# #' These functions calculate the q-values corresponding to a given set of p-values, directly copy without modification from https://github.com/StoreyLab/qvalue. #' It is implemented under the LGPL license (https://github.com/StoreyLab/qvalue/blob/master/DESCRIPTION) #' The functions are marked as internal, meaning it is not meant to be exported for external use. From 9a6d81f7d27ef65c7145f4d173079777584b0406 Mon Sep 17 00:00:00 2001 From: danielnachun Date: Thu, 4 Sep 2025 17:48:14 +0000 Subject: [PATCH 5/5] Update documentation --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 9ca5d8f..5034204 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -20,7 +20,7 @@ Description: A multi-task learning approach to variable selection regression wit Encoding: UTF-8 LazyDataCompression: xz LazyData: true -RoxygenNote: 7.3.2 +RoxygenNote: 7.3.3 URL: https://github.com/StatFunGen/colocboost BugReports: https://github.com/StatFunGen/colocboost/issues Depends: