diff --git a/NAMESPACE b/NAMESPACE index 9a01d89..0738505 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -5,7 +5,6 @@ export(colocboost_assemble) export(colocboost_check_update_jk) export(colocboost_inits) export(colocboost_plot) -export(colocboost_post_inference) export(colocboost_update) export(colocboost_workhorse) export(get_cos_summary) diff --git a/R/colocboost_inference.R b/R/colocboost_inference.R index 8e0da1c..3dae7eb 100644 --- a/R/colocboost_inference.R +++ b/R/colocboost_inference.R @@ -12,7 +12,7 @@ #' #' @rdname colocboost_post_inference #' @keywords cb_post_inference -#' @export +#' @noRd colocboost_post_inference <- function() { message("This function post inferences of colocboost output. See details for more information.") } diff --git a/R/colocboost_workhorse.R b/R/colocboost_workhorse.R index f5fa8f2..b8e5699 100644 --- a/R/colocboost_workhorse.R +++ b/R/colocboost_workhorse.R @@ -9,6 +9,8 @@ #' Step 2: `colocboost_update` core function of the proximity smoothed gradient boosting update. #' #' Step 3: check the stop criteria for each outcome. +#' +#' There is a version for LD free version with one causal assumption, implemented in `colocboost_one_causal`. #' #' @export colocboost_workhorse <- function(cb_data, diff --git a/data/Ind_5traits.rda b/data/Ind_5traits.rda new file mode 100644 index 0000000..7a71840 Binary files /dev/null and b/data/Ind_5traits.rda differ diff --git a/data/Sumstat_5traits.rda b/data/Sumstat_5traits.rda new file mode 100644 index 0000000..9c31aa3 Binary files /dev/null and b/data/Sumstat_5traits.rda differ diff --git a/man/colocboost_post_inference.Rd b/man/colocboost_post_inference.Rd deleted file mode 100644 index d1f72c1..0000000 --- a/man/colocboost_post_inference.Rd +++ /dev/null @@ -1,18 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/colocboost_inference.R -\name{colocboost_post_inference} -\alias{colocboost_post_inference} -\title{Set of functions for post inferences from ColocBoost} -\usage{ -colocboost_post_inference() -} -\description{ -The \code{colocboost_post_inference} functions access basic properties inferences from a fitted ColocBoost model. This documentation serves as a summary for all related post-inference functions. -} -\details{ -The following functions are included in this set: -\code{get_abc} get the colocalization summary table with or without the specific outcomes. - -These functions are not exported individually and are accessed via \code{colocboost_post_inference}. -} -\keyword{cb_post_inference} diff --git a/man/colocboost_workhorse.Rd b/man/colocboost_workhorse.Rd index 71e5ef1..4d6c07d 100644 --- a/man/colocboost_workhorse.Rd +++ b/man/colocboost_workhorse.Rd @@ -42,4 +42,6 @@ Step 1: \code{colocboost_check_update_jk} selection scheme to choose outcomes ne Step 2: \code{colocboost_update} core function of the proximity smoothed gradient boosting update. Step 3: check the stop criteria for each outcome. + +There is a version for LD free version with one causal assumption, implemented in \code{colocboost_one_causal}. }