From 9451bf2be57877a33e8a9aa0d0c6b4eac39fe0ac Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Tue, 22 Apr 2025 18:50:17 -0700 Subject: [PATCH 1/3] add r-susier --- .github/environment/pixi.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/environment/pixi.toml b/.github/environment/pixi.toml index 24b6137..dc71f8b 100644 --- a/.github/environment/pixi.toml +++ b/.github/environment/pixi.toml @@ -33,5 +33,6 @@ r44 = {features = ["r44"]} "r-devtools" = "*" "r-mass" = "*" "r-rcmdcheck" = "*" +"r-susier" = "*" "r-tidyverse" = "*" "qpdf" = "*" From 21712df1d1719719c4082fc6339bd6f899fbb85d Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Tue, 22 Apr 2025 19:30:34 -0700 Subject: [PATCH 2/3] fix citation --- inst/CITATION | 58 +++++++++++++++++++++++++++------------------------ 1 file changed, 31 insertions(+), 27 deletions(-) diff --git a/inst/CITATION b/inst/CITATION index 9cb21d5..62baaa9 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -1,27 +1,31 @@ -citHeader("To cite colocboost in publications use:") - -citEntry( - entry = "Article", - title = "Integrative multi-omics QTL colocalization maps regulatory architecture in aging human brain", - author = c(person("Xuewei", "Cao"), - person("Haochen", "Sun"), - person("Ru", "Feng"), - person("Rahul", "Mazumder"), - person("Cristian F. B.", "Najar"), - person("Yang I.", "Li"), - person("Philip L.", "de Jager"), - person("David", "Bennett"), - person("The Alzheimer's Disease Functional Genomics Consortium"), - person("Kushal K.", "Dey"), - person("Guanghao", "Wang")), - journal = "medRxiv", - year = "2025", - note = "Preprint", - url = "https://doi.org/10.1101/2025.04.17.25326042", - textVersion = paste( - "Cao X, Sun H, Feng R, Mazumder R, Najar CFB, Li YI, de Jager PL, Bennett D, The Alzheimer's Disease Functional Genomics Consortium, Dey KK, Wang G. (2025).", - "Integrative multi-omics QTL colocalization maps regulatory architecture in aging human brain.", - "medRxiv.", - "https://doi.org/10.1101/2025.04.17.25326042" - ) -) \ No newline at end of file +bibentry(bibtype = "Article", + key = "cao_etall:2025", + title = "Integrative multi-omics QTL colocalization maps regulatory architecture in aging human brain", + author = c(person(given = "Xuewei", + family = "Cao", + email = "xc2270@cumc.columbia.edu"), + person(given = "Haochen", + family = "Sun", + email = "hs3393@cumc.columbia.edu"), + person(given = "Ru", + family = "Feng", + email = "rf2872@cumc.columbia.edu"), + person(given = "Rahul", + family = "Mazumder"), + person(given = "Cristian F. B.", + family = "Najar"), + person(given = "Yang I.", + family = "Li"), + person(given = "Philip L.", + family = "de Jager"), + person(given = "David", + family = "Bennett"), + person(given = "The Alzheimer's Disease Functional Genomics Consortium"), + person(given = "Kushal K.", + family = "Dey"), + person(given = "Guanghao", + family = "Wang")), + year = "2025", + journal = "medRxiv", + url = "https://doi.org/10.1101/2025.04.17.25326042", + note = "Preprint") From 35002a60b2a189456a735609e7735e888a6c977e Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Tue, 22 Apr 2025 20:23:45 -0700 Subject: [PATCH 3/3] add cph --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index b427df5..a2d5448 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -4,7 +4,7 @@ Date: 2025-04-13 Title: Multi-Context Colocalization Analysis for QTL and GWAS Studies Version: 0.1.0 Authors@R: c( - person(given = "Xuewei", family = "Cao", email = "xc2270@cumc.columbia.edu", role = c("cre", "aut")), + person(given = "Xuewei", family = "Cao", email = "xc2270@cumc.columbia.edu", role = c("cre", "aut", "cph")), person(given = "Haochen", family = "Sun", email = "hs3393@cumc.columbia.edu", role = "aut"), person(given = "Ru", family = "Feng", email = "rf2872@cumc.columbia.edu", role = "aut"), person(given = "Daniel", family = "Nachun", role = "aut"),