Add variant-count windowing mode to DENTIST, default QC to SLALOM #16

	name: Deploy website

	on:
	push:
	branches: ["main"]
	workflow_dispatch:

	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

	permissions:
	contents: read
	pages: write
	id-token: write

	concurrency:
	group: "pages"
	cancel-in-progress: false

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout main
	uses: actions/checkout@v6
	with:
	ref: main

	- name: Create TOML from recipe
	run: \|
	.github/workflows/create_toml_from_yaml.sh ${GITHUB_WORKSPACE}
	mkdir /tmp/pixi
	mv ${GITHUB_WORKSPACE}/pixi.toml /tmp/pixi

	- name: Setup pixi
	uses: prefix-dev/setup-pixi@v0.9.4
	with:
	manifest-path: /tmp/pixi/pixi.toml

	- name: Install GitHub-only dependencies
	run: pixi run --environment r44 --manifest-path /tmp/pixi/pixi.toml install_github_deps

	- name: Build pkgdown site
	run: pixi run --environment r44 --manifest-path /tmp/pixi/pixi.toml pkgdown_build

	- name: Disable Jekyll
	run: touch docs/.nojekyll

	- name: Setup Pages
	uses: actions/configure-pages@v5

	- name: Upload artifact
	uses: actions/upload-pages-artifact@v4
	with:
	path: ./docs

	deploy:
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	runs-on: ubuntu-latest
	needs: build
	steps:
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v4

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