diff --git a/tests/testthat/test_coef_predict.R b/tests/testthat/test_coef_predict.R index 9221a0fc..2bf87106 100644 --- a/tests/testthat/test_coef_predict.R +++ b/tests/testthat/test_coef_predict.R @@ -1,5 +1,3 @@ -devtools::load_all(".") - context("coef and predict S3 methods") # ============================================================================= diff --git a/tests/testthat/test_generic_methods.R b/tests/testthat/test_generic_methods.R index d5676712..fc6e95d5 100644 --- a/tests/testthat/test_generic_methods.R +++ b/tests/testthat/test_generic_methods.R @@ -1,5 +1,3 @@ -devtools::load_all(".") - context("Generic methods infrastructure") # ============================================================================= diff --git a/tests/testthat/test_ibss.R b/tests/testthat/test_ibss.R index d9125a87..c8c1b7fb 100644 --- a/tests/testthat/test_ibss.R +++ b/tests/testthat/test_ibss.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Iterative Bayesian Stepwise Selection (IBSS)") # ============================================================================= diff --git a/tests/testthat/test_individual_data_methods.R b/tests/testthat/test_individual_data_methods.R index b456034e..78e2d9ba 100644 --- a/tests/testthat/test_individual_data_methods.R +++ b/tests/testthat/test_individual_data_methods.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("S3 methods for individual data class") # ============================================================================= diff --git a/tests/testthat/test_plotting.R b/tests/testthat/test_plotting.R index 8dba8fd8..97b90694 100644 --- a/tests/testthat/test_plotting.R +++ b/tests/testthat/test_plotting.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Plotting functions") # ============================================================================= diff --git a/tests/testthat/test_refinement.R b/tests/testthat/test_refinement.R index 41264612..23a97803 100644 --- a/tests/testthat/test_refinement.R +++ b/tests/testthat/test_refinement.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Refinement unit tests") # ============================================================================= diff --git a/tests/testthat/test_rss_lambda_methods.R b/tests/testthat/test_rss_lambda_methods.R index 4f42a10c..a658c317 100644 --- a/tests/testthat/test_rss_lambda_methods.R +++ b/tests/testthat/test_rss_lambda_methods.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("S3 methods for rss_lambda data class") # ============================================================================= diff --git a/tests/testthat/test_rss_utils.R b/tests/testthat/test_rss_utils.R index 9c42a8e4..4aaa0156 100644 --- a/tests/testthat/test_rss_utils.R +++ b/tests/testthat/test_rss_utils.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("RSS utility functions") # ============================================================================= diff --git a/tests/testthat/test_single_effect_regression.R b/tests/testthat/test_single_effect_regression.R index 4a48fff5..83e2c8dd 100644 --- a/tests/testthat/test_single_effect_regression.R +++ b/tests/testthat/test_single_effect_regression.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Single Effect Regression") # ============================================================================= diff --git a/tests/testthat/test_sparse_multiplication.R b/tests/testthat/test_sparse_multiplication.R index 88ffccf4..b6d5e840 100644 --- a/tests/testthat/test_sparse_multiplication.R +++ b/tests/testthat/test_sparse_multiplication.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("sparse multiplication utilities") # ============================================================================= diff --git a/tests/testthat/test_sufficient_stats_methods.R b/tests/testthat/test_sufficient_stats_methods.R index dbc1b523..79b1de4f 100644 --- a/tests/testthat/test_sufficient_stats_methods.R +++ b/tests/testthat/test_sufficient_stats_methods.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("S3 methods for sufficient statistics (ss) data class") # ============================================================================= diff --git a/tests/testthat/test_summary_print.R b/tests/testthat/test_summary_print.R index 7a921a5c..cf428af7 100644 --- a/tests/testthat/test_summary_print.R +++ b/tests/testthat/test_summary_print.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("summary and print S3 methods") # ============================================================================= diff --git a/tests/testthat/test_susie.R b/tests/testthat/test_susie.R index 256743d0..2158fbb8 100644 --- a/tests/testthat/test_susie.R +++ b/tests/testthat/test_susie.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Main susie interface functions") # ============================================================================= @@ -286,7 +283,6 @@ test_that("susie handles unmappable_effects = inf", { }) test_that("susie handles unmappable_effects = ash", { - skip("Skipping due to mr.ash bug with missing value in if condition") skip_if_not_installed("mr.ash.alpha.mccreight") set.seed(22) diff --git a/tests/testthat/test_susie_auto.R b/tests/testthat/test_susie_auto.R index d0e0ae38..b193b909 100644 --- a/tests/testthat/test_susie_auto.R +++ b/tests/testthat/test_susie_auto.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("susie_auto unit tests") # ============================================================================= diff --git a/tests/testthat/test_susie_constructors.R b/tests/testthat/test_susie_constructors.R index bbdd7b2f..eaf7e3fe 100644 --- a/tests/testthat/test_susie_constructors.R +++ b/tests/testthat/test_susie_constructors.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("SuSiE Data Constructors") # ============================================================================= diff --git a/tests/testthat/test_susie_get_functions.R b/tests/testthat/test_susie_get_functions.R index e2ec1879..d0012c02 100644 --- a/tests/testthat/test_susie_get_functions.R +++ b/tests/testthat/test_susie_get_functions.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("susie_get_* functions") # ============================================================================= diff --git a/tests/testthat/test_susie_utils.R b/tests/testthat/test_susie_utils.R index 0fece729..5035c591 100644 --- a/tests/testthat/test_susie_utils.R +++ b/tests/testthat/test_susie_utils.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Utility functions for susieR") # ============================================================================= @@ -1120,7 +1117,7 @@ test_that("est_residual_variance estimates residual variance", { expect_true(result > 0) # Should be reasonable for random data - expect_true(result < 10) # Shouldn't be huge for standardized data + expect_true(result < 10) }) test_that("update_model_variance updates variance components", { diff --git a/tests/testthat/test_susie_workhorse.R b/tests/testthat/test_susie_workhorse.R index fc4922c0..4ca8a973 100644 --- a/tests/testthat/test_susie_workhorse.R +++ b/tests/testthat/test_susie_workhorse.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("SuSiE Workhorse - Main Orchestration") # ============================================================================= diff --git a/tests/testthat/test_trendfilter.R b/tests/testthat/test_trendfilter.R index 5474defb..d45c3091 100644 --- a/tests/testthat/test_trendfilter.R +++ b/tests/testthat/test_trendfilter.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Trend filtering") # ============================================================================= diff --git a/tests/testthat/test_univariate_regression.R b/tests/testthat/test_univariate_regression.R index c0774b46..3c402a86 100644 --- a/tests/testthat/test_univariate_regression.R +++ b/tests/testthat/test_univariate_regression.R @@ -1,6 +1,3 @@ -devtools::load_all(".") - - context("Univariate regression") # =============================================================================