update submission to CRAN doc: to rhub 2

[plecharpent]

• installation

pak::pkg_install("r-hub/rhub")
or

remotes::install_github("r-hub/rhub")

• and then see the manual, especially
  https://r-hub.github.io/rhub/dev/articles/rhubv2.html
• and the Gábor Csárdi post
  https://blog.r-hub.io/2024/04/11/rhub2/

[plecharpent]

rhub_setup()
Setting up R-hub v2.
✔ Found R package at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Found git repository at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Workflow file
/home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos/.github/workflows/rhub.yaml
already exists and it is current.

Notes:
• The workflow file must be added to the default branch of the GitHub repository.
• GitHub actions must be enabled for the repository. They are disabled for forked repositories by default.

Next steps:
• Add the workflow file to git using git add <filename>.
• Commit it to git using git commit (if not committed already).
• Push the commit to GitHub using git push (if not pushed already).
• Call rhub::rhub_doctor() to check that you have set up R-hub correctly.
• Call rhub::rhub_check() to check your package.

[plecharpent]

the workflow file must be on the main branch

rhub::rhub_doctor()
✔ Found R package at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Found git repository at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Found GitHub PAT.
✔ Found repository on GitHub at
https://github.com/SticsRPacks/SticsRFiles.git.
✔ GitHub PAT has the right scopes.
✖ Does the default branch of your git repo have the R-hub workflow file?
Error:
! Could not find R-hub's workflow file in the repository at
https://github.com/SticsRPacks/SticsRFiles.git.
ℹ The workflow file must be at .github/workflows/rhub.yaml.
ℹ If you have added and committed the workflow file, you need to push the
commit to GitHub with git push.
Type .Last.error to see the more details.

[plecharpent]

rhub::rhub_doctor()
✔ Found R package at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Found git repository at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Found GitHub PAT.
✔ Found repository on GitHub at https://github.com/SticsRPacks/SticsRFiles.git.
✔ GitHub PAT has the right scopes.
✔ Found R-hub workflow in default branch, and it is active.
→ WOOT! You are ready to run rhub::rhub_check() on this package.

[plecharpent]

rhub::rhub_check()
✔ Found git repository at /home/plecharpent/Work/projet_stics/projet_SticsRPacks/projet_package_SticsRFiles/SticsRFiles_repos.
✔ Found GitHub PAT.

Available platforms (see rhub::rhub_platforms() for details):

1 [VM] linux R-* (any version) ubuntu-latest on GitHub
2 [VM] macos R-* (any version) macos-latest on GitHub
3 [VM] macos-arm64 R-* (any version) macos-14 on GitHub
4 [VM] windows R-* (any version) windows-latest on GitHub
5 [CT] atlas R-devel (2024-04-09 r86391) Fedora Linux 38 (Container Image)
6 [CT] clang-asan R-devel (2024-04-09 r86391) Ubuntu 22.04.4 LTS
7 [CT] clang16 R-devel (2024-04-08 r86370) Ubuntu 22.04.4 LTS
8 [CT] clang17 R-devel (2024-04-08 r86370) Ubuntu 22.04.4 LTS
9 [CT] clang18 R-devel (2024-04-08 r86370) Ubuntu 22.04.4 LTS
10 [CT] donttest R-devel (2024-04-08 r86370) Ubuntu 22.04.4 LTS
11 [CT] gcc13 R-devel (2024-04-09 r86391) Fedora Linux 38 (Container Image)
12 [CT] intel R-devel (2024-04-09 r86391) Fedora Linux 38 (Container Image)
13 [CT] mkl R-devel (2024-04-09 r86391) Fedora Linux 38 (Container Image)
14 [CT] nold R-devel (2024-04-09 r86391) Ubuntu 22.04.4 LTS
15 [CT] nosuggests R-devel (2024-04-09 r86391) Fedora Linux 38 (Container Image)
16 [CT] ubuntu-clang R-devel (2024-04-09 r86391) Ubuntu 22.04.4 LTS
17 [CT] ubuntu-gcc12 R-devel (2024-04-09 r86391) Ubuntu 22.04.4 LTS
18 [CT] ubuntu-next R-4.4.0 beta (2024-04-09 r86391) Ubuntu 22.04.4 LTS
19 [CT] ubuntu-release R-4.3.3 (2024-02-29) Ubuntu 22.04.4 LTS
20 [CT] valgrind R-devel (2024-04-09 r86391) Fedora Linux 38 (Container Image)

Selection (comma separated numbers, 0 to cancel): 4,19,11

✔ Check started: windows, ubuntu-release, gcc13 (knitted-pinkriverdolphin).
See https://github.com/SticsRPacks/SticsRFiles/actions for live output!

[plecharpent]

The R Consortium runners
If you don’t want to put your package on GitHub, you can still use the rhub package to run package checks on any supported platform using a shared pool of runners in the https://github.com/r-hub2 GitHub organization.

The process is similar to the first version of R-hub:

• Set your working directory to the R package you want to check.
• Obtain a token from R-hub, to verify your email address:

rc_new_token()
(You do not need to do this, if you already submitted packages to a previous version of R-hub from the same machine, using the same email address. Call rc_list_local_tokens() to check if you already have tokens.)

• Submit a build with

rc_submit()
Select the platforms you want to use, and follow the instructions and the link provided to see your check results.