delete sample from database: segmentation fault on CLI #687
Description
It seems there is a way to delete samples from a uri/database via the CLI, ie tiledbvcf delete. I'm getting an error when I try this and need help understanding why this is happening.
$ tiledbvcf delete -u s3://path/to/db -s awesome_sample
[2024-03-27 19:11:12.150] [tiledb-vcf] [Process: 24392] [Thread: 24392] [critical] Exception: SubarrayPartitioner: Trying to partition a unary range because of memory budget, this will cause the query to run very slow. Increase `sm.memory_budget` and `sm.memory_budget_var` through the configuration settings to avoid this issue. To override and run the query with the same budget, set `sm.skip_unary_partitioning_budget_check` to `true`.
Segmentation fault
## version
$ tiledbvcf --version
TileDB-VCF version 0234b10-modified
TileDB version 2.18.3
htslib version 1.19And then it seems like there is no way to delete samples from the python API?
>>> import tiledbvcf
>>> tiledbvcf.version
'0.27.1'
>>> dir(tiledbvcf.Dataset)
['__class__', '__delattr__', '__dict__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '__weakref__', '_set_read_cfg', '_set_samples', '_set_write_cfg', 'attributes', 'continue_read', 'continue_read_arrow', 'count', 'create_dataset', 'export', 'ingest_samples', 'read', 'read_arrow', 'read_completed', 'read_iter', 'read_variant_stats', 'sample_count', 'samples', 'schema_version', 'tiledb_stats', 'version']