full pipeline testing

[averagehat]

Maybe sometime worth doing.

Read simulators:

• PBSim link
• Illumina Art link

related project: https://github.com/isovic/overlap-benchmark

these could go in bioconda but they are only a testing dependency and not a part of the framework so the user won't have to install

Data:

• script to download reference from accession and mutate it etc.
• blast database

[averagehat]

• generate miseq from reference
• generate pacbio from reference
• mutation expected: 1043: A -> G, X%
• Make/download reference
• cut ref into X pieces, generate mutations on each piece
• denovo/mapping