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make_summary reformat #273

@necrolyte2

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@necrolyte2

After discussing with @demis001 we think it will be best to reformat the make_summary output such that the unassembled reads section is put beneath the contigs section and the numReads is aligned with both.
These changes would allow for investigators to easily sort/filter via the command line and in excel

  • ctg# field would be removed
  • Unassembled reads would still be grouped by the --group-by column
  • The project/sample name column for each line would then be concatenated with the contig name
    • For unassembled reads the same would occur, however, each line would get it's own identifier number(aka, the first unassembled line would be ur1, the second would be ur2)
  • All other columns would be removed from the report and could be gathered by the user or another script very easily such as grep '.' projectdir/results/*/*.count

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