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Currently setup.py install the old subsamplebam.py script, not the new module in subsample_mindepth.py. Instead it should install subsample_mindepth, possibly allowing a flag to use the old script.
Currently
setup.pyinstall the oldsubsamplebam.pyscript, not the new module insubsample_mindepth.py. Instead it should installsubsample_mindepth, possibly allowing a flag to use the old script.