From 3ef5f61838886e2b83f6b160a3fa2b82cfa69d58 Mon Sep 17 00:00:00 2001 From: ShakiraAgata <180181413+ShakiraAgata@users.noreply.github.com> Date: Mon, 9 Feb 2026 09:05:59 +0100 Subject: [PATCH 1/3] Removing [METHOD] block from titles of the assays --- .../cellrox__green_reagent_for_oxidative_stress_detection.json | 2 +- docs/methods/immunofluorescent_detection_of_collagen___1.json | 2 +- docs/methods/intracellular_measurements.json | 2 +- docs/methods/kim_1_staining.json | 2 +- docs/methods/lysotracker_green_dnd_26.json | 2 +- docs/methods/method-148.json | 2 +- docs/methods/mitoprobe_jc_1_assay_kit.json | 2 +- docs/methods/mitotracker_deep_red_fm_assay.json | 2 +- docs/methods/p_gp_staining.json | 2 +- docs/methods/real_time_polymerase_chain_reaction.json | 2 +- docs/methods/rna_sequencing.json | 2 +- 11 files changed, 11 insertions(+), 11 deletions(-) diff --git a/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.json b/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.json index 5631f129..f50ba6d1 100644 --- a/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.json +++ b/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.json @@ -1,6 +1,6 @@ { "id": "cellrox__green_reagent_for_oxidative_stress_detection", - "method": "[METHOD]: CellROX Green Reagent for oxidative stress detection", + "method": "CellROX Green Reagent for oxidative stress detection", "issue_number": 139, "name_of_the_method_content": "CellROX Green Reagent for oxidative stress detection", "method_description_content": "ROS detection by fluorescent probe", diff --git a/docs/methods/immunofluorescent_detection_of_collagen___1.json b/docs/methods/immunofluorescent_detection_of_collagen___1.json index dd63d908..bc7a46dc 100644 --- a/docs/methods/immunofluorescent_detection_of_collagen___1.json +++ b/docs/methods/immunofluorescent_detection_of_collagen___1.json @@ -1,6 +1,6 @@ { "id": "immunofluorescent_detection_of_collagen___1", - "method": "[METHOD]: Collagen I Polyclonal Antibody", + "method": "Collagen I Polyclonal Antibody", "issue_number": 142, "name_of_the_method_content": "immunofluorescent detection of collagen - 1", "method_description_content": "immunofluorescent detection of collagen - 1", diff --git a/docs/methods/intracellular_measurements.json b/docs/methods/intracellular_measurements.json index 2afe2619..94d1d955 100644 --- a/docs/methods/intracellular_measurements.json +++ b/docs/methods/intracellular_measurements.json @@ -1,6 +1,6 @@ { "id": "intracellular_measurements", - "method": "[METHOD]: Intracellular measurements", + "method": "Intracellular measurements", "issue_number": 146, "name_of_the_method_content": "Intracellular measurements", "method_description_content": "Intracellular measurements are determined in cell lysates using LCMS, normalized by protein expression that has been measured by 2D Quant", diff --git a/docs/methods/kim_1_staining.json b/docs/methods/kim_1_staining.json index b9545305..31ef1e56 100644 --- a/docs/methods/kim_1_staining.json +++ b/docs/methods/kim_1_staining.json @@ -1,6 +1,6 @@ { "id": "kim_1_staining", - "method": "[METHOD]: KIM-1 staining", + "method": "KIM-1 staining", "issue_number": 147, "name_of_the_method_content": "KIM-1 staining", "method_description_content": "KIM-1 staining is an immunofluorescent staining of kidney injury molecule 1, an protein that is expressed when kidney injury takes place", diff --git a/docs/methods/lysotracker_green_dnd_26.json b/docs/methods/lysotracker_green_dnd_26.json index 77fff77a..2715f965 100644 --- a/docs/methods/lysotracker_green_dnd_26.json +++ b/docs/methods/lysotracker_green_dnd_26.json @@ -1,6 +1,6 @@ { "id": "lysotracker_green_dnd_26", - "method": "[METHOD]: LysoTracker Green DND-26", + "method": "LysoTracker Green DND-26", "issue_number": 145, "name_of_the_method_content": "LysoTracker Green DND-26", "method_description_content": "Fluorescent - based detection of lysosomes", diff --git a/docs/methods/method-148.json b/docs/methods/method-148.json index aa4dc648..0891b2b8 100644 --- a/docs/methods/method-148.json +++ b/docs/methods/method-148.json @@ -1,6 +1,6 @@ { "id": "method-148", - "service": "[METHOD]: P-gp Staining", + "service": "P-gp Staining", "issue_number": 148, "name_of_the_method_content": "P-gp Staining", "method_description_content": "Immunofluorescent staining of P-gp protein, the efflux transporter of tacrolimus", diff --git a/docs/methods/mitoprobe_jc_1_assay_kit.json b/docs/methods/mitoprobe_jc_1_assay_kit.json index 5add73f7..ea88c443 100644 --- a/docs/methods/mitoprobe_jc_1_assay_kit.json +++ b/docs/methods/mitoprobe_jc_1_assay_kit.json @@ -1,6 +1,6 @@ { "id": "mitoprobe_jc_1_assay_kit", - "method": "[METHOD]: MitoProbe\u2122 JC-1 Assay Kit", + "method": "MitoProbe\u2122 JC-1 Assay Kit", "issue_number": 138, "name_of_the_method_content": "MitoProbe\u2122 JC-1 Assay Kit", "method_description_content": "mitochondrial membrane potential assay", diff --git a/docs/methods/mitotracker_deep_red_fm_assay.json b/docs/methods/mitotracker_deep_red_fm_assay.json index eb676524..78d3645e 100644 --- a/docs/methods/mitotracker_deep_red_fm_assay.json +++ b/docs/methods/mitotracker_deep_red_fm_assay.json @@ -1,6 +1,6 @@ { "id": "mitotracker_deep_red_fm_assay", - "method": "[METHOD]: MitoTracker Deep Red FM", + "method": "MitoTracker Deep Red FM", "issue_number": 140, "name_of_the_method_content": "MitoTracker Deep Red FM assay", "method_description_content": "Fluorescent-based assay to label mitochondria", diff --git a/docs/methods/p_gp_staining.json b/docs/methods/p_gp_staining.json index 8a9ac61a..7d3637bf 100644 --- a/docs/methods/p_gp_staining.json +++ b/docs/methods/p_gp_staining.json @@ -1,6 +1,6 @@ { "id": "p_gp_staining", - "method": "[METHOD]: P-gp Staining", + "method": "P-gp Staining", "issue_number": 148, "name_of_the_method_content": "P-gp Staining", "method_description_content": "Immunofluorescent staining of P-gp protein, the efflux transporter of tacrolimus", diff --git a/docs/methods/real_time_polymerase_chain_reaction.json b/docs/methods/real_time_polymerase_chain_reaction.json index a08c15d9..2f713653 100644 --- a/docs/methods/real_time_polymerase_chain_reaction.json +++ b/docs/methods/real_time_polymerase_chain_reaction.json @@ -1,6 +1,6 @@ { "id": "real_time_polymerase_chain_reaction", - "method": "[METHOD]: RT-qPCR", + "method": "RT-qPCR", "issue_number": 141, "name_of_the_method_content": "Real-time polymerase chain reaction", "method_description_content": "Technology used for measuring RNA using PCR", diff --git a/docs/methods/rna_sequencing.json b/docs/methods/rna_sequencing.json index 98489ee0..463b2685 100644 --- a/docs/methods/rna_sequencing.json +++ b/docs/methods/rna_sequencing.json @@ -1,6 +1,6 @@ { "id": "rna_sequencing", - "method": "[METHOD]: RNA-sequencing", + "method": "RNA-sequencing", "issue_number": 143, "name_of_the_method_content": "RNA-sequencing", "method_description_content": "next-generation sequencing technique used to quantify and identify RNA molecules in a biological sample", From 7c7e4622bb2bcc8adb7bbbed212506b0797943e8 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Mon, 9 Feb 2026 08:06:16 +0000 Subject: [PATCH 2/3] Updated service meta-data collection --- cap/methods_index.json | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/cap/methods_index.json b/cap/methods_index.json index 8dc46f22..8b0a58d8 100644 --- a/cap/methods_index.json +++ b/cap/methods_index.json @@ -67,7 +67,7 @@ }, "cellrox__green_reagent_for_oxidative_stress_detection": { "id": "cellrox__green_reagent_for_oxidative_stress_detection", - "method": "[METHOD]: CellROX Green Reagent for oxidative stress detection", + "method": "CellROX Green Reagent for oxidative stress detection", "issue_number": 139, "sop": "", "method_name_content": "CellROX Green Reagent for oxidative stress detection", @@ -155,7 +155,7 @@ }, "immunofluorescent_detection_of_collagen___1": { "id": "immunofluorescent_detection_of_collagen___1", - "method": "[METHOD]: Collagen I Polyclonal Antibody", + "method": "Collagen I Polyclonal Antibody", "issue_number": 142, "sop": "", "method_name_content": "immunofluorescent detection of collagen - 1", @@ -177,7 +177,7 @@ }, "intracellular_measurements": { "id": "intracellular_measurements", - "method": "[METHOD]: Intracellular measurements", + "method": "Intracellular measurements", "issue_number": 146, "sop": "", "method_name_content": "Intracellular measurements", @@ -199,7 +199,7 @@ }, "kim_1_staining": { "id": "kim_1_staining", - "method": "[METHOD]: KIM-1 staining", + "method": "KIM-1 staining", "issue_number": 147, "sop": "", "method_name_content": "KIM-1 staining", @@ -243,7 +243,7 @@ }, "lysotracker_green_dnd_26": { "id": "lysotracker_green_dnd_26", - "method": "[METHOD]: LysoTracker Green DND-26", + "method": "LysoTracker Green DND-26", "issue_number": 145, "sop": "", "method_name_content": "LysoTracker Green DND-26", @@ -287,7 +287,7 @@ }, "mitoprobe_jc_1_assay_kit": { "id": "mitoprobe_jc_1_assay_kit", - "method": "[METHOD]: MitoProbe\u2122 JC-1 Assay Kit", + "method": "MitoProbe\u2122 JC-1 Assay Kit", "issue_number": 138, "sop": "", "method_name_content": "MitoProbe\u2122 JC-1 Assay Kit", @@ -309,7 +309,7 @@ }, "mitotracker_deep_red_fm_assay": { "id": "mitotracker_deep_red_fm_assay", - "method": "[METHOD]: MitoTracker Deep Red FM", + "method": "MitoTracker Deep Red FM", "issue_number": 140, "sop": "", "method_name_content": "MitoTracker Deep Red FM assay", @@ -331,7 +331,7 @@ }, "p_gp_staining": { "id": "p_gp_staining", - "method": "[METHOD]: P-gp Staining", + "method": "P-gp Staining", "issue_number": 148, "sop": "", "method_name_content": "P-gp Staining", @@ -353,7 +353,7 @@ }, "real_time_polymerase_chain_reaction": { "id": "real_time_polymerase_chain_reaction", - "method": "[METHOD]: RT-qPCR", + "method": "RT-qPCR", "issue_number": 141, "sop": "", "method_name_content": "Real-time polymerase chain reaction", @@ -375,7 +375,7 @@ }, "rna_sequencing": { "id": "rna_sequencing", - "method": "[METHOD]: RNA-sequencing", + "method": "RNA-sequencing", "issue_number": 143, "sop": "", "method_name_content": "RNA-sequencing", From 2356de4ef8bb5e8e60e41efda35721073d22449b Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Mon, 9 Feb 2026 08:06:20 +0000 Subject: [PATCH 3/3] Generate method documentation from JSON files --- .../cellrox__green_reagent_for_oxidative_stress_detection.md | 2 +- docs/methods/immunofluorescent_detection_of_collagen___1.md | 2 +- docs/methods/intracellular_measurements.md | 2 +- docs/methods/kim_1_staining.md | 2 +- docs/methods/lysotracker_green_dnd_26.md | 2 +- docs/methods/mitoprobe_jc_1_assay_kit.md | 2 +- docs/methods/mitotracker_deep_red_fm_assay.md | 2 +- docs/methods/p_gp_staining.md | 2 +- docs/methods/real_time_polymerase_chain_reaction.md | 2 +- docs/methods/rna_sequencing.md | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.md b/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.md index da424114..fcbb02f5 100644 --- a/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.md +++ b/docs/methods/cellrox__green_reagent_for_oxidative_stress_detection.md @@ -1,4 +1,4 @@ -# [METHOD]: CellROX Green Reagent for oxidative stress detection +# CellROX Green Reagent for oxidative stress detection diff --git a/docs/methods/immunofluorescent_detection_of_collagen___1.md b/docs/methods/immunofluorescent_detection_of_collagen___1.md index 50a7aa6d..f055906e 100644 --- a/docs/methods/immunofluorescent_detection_of_collagen___1.md +++ b/docs/methods/immunofluorescent_detection_of_collagen___1.md @@ -1,4 +1,4 @@ -# [METHOD]: Collagen I Polyclonal Antibody +# Collagen I Polyclonal Antibody diff --git a/docs/methods/intracellular_measurements.md b/docs/methods/intracellular_measurements.md index c7ef739c..988923f0 100644 --- a/docs/methods/intracellular_measurements.md +++ b/docs/methods/intracellular_measurements.md @@ -1,4 +1,4 @@ -# [METHOD]: Intracellular measurements +# Intracellular measurements diff --git a/docs/methods/kim_1_staining.md b/docs/methods/kim_1_staining.md index bc2333aa..e182af13 100644 --- a/docs/methods/kim_1_staining.md +++ b/docs/methods/kim_1_staining.md @@ -1,4 +1,4 @@ -# [METHOD]: KIM-1 staining +# KIM-1 staining diff --git a/docs/methods/lysotracker_green_dnd_26.md b/docs/methods/lysotracker_green_dnd_26.md index e6c9dedb..0e68b693 100644 --- a/docs/methods/lysotracker_green_dnd_26.md +++ b/docs/methods/lysotracker_green_dnd_26.md @@ -1,4 +1,4 @@ -# [METHOD]: LysoTracker Green DND-26 +# LysoTracker Green DND-26 diff --git a/docs/methods/mitoprobe_jc_1_assay_kit.md b/docs/methods/mitoprobe_jc_1_assay_kit.md index 6099fdda..bb9508f2 100644 --- a/docs/methods/mitoprobe_jc_1_assay_kit.md +++ b/docs/methods/mitoprobe_jc_1_assay_kit.md @@ -1,4 +1,4 @@ -# [METHOD]: MitoProbe™ JC-1 Assay Kit +# MitoProbe™ JC-1 Assay Kit diff --git a/docs/methods/mitotracker_deep_red_fm_assay.md b/docs/methods/mitotracker_deep_red_fm_assay.md index cbf304ab..71007239 100644 --- a/docs/methods/mitotracker_deep_red_fm_assay.md +++ b/docs/methods/mitotracker_deep_red_fm_assay.md @@ -1,4 +1,4 @@ -# [METHOD]: MitoTracker Deep Red FM +# MitoTracker Deep Red FM diff --git a/docs/methods/p_gp_staining.md b/docs/methods/p_gp_staining.md index 15c159b6..99b398f7 100644 --- a/docs/methods/p_gp_staining.md +++ b/docs/methods/p_gp_staining.md @@ -1,4 +1,4 @@ -# [METHOD]: P-gp Staining +# P-gp Staining diff --git a/docs/methods/real_time_polymerase_chain_reaction.md b/docs/methods/real_time_polymerase_chain_reaction.md index d67467ba..a86fbc8c 100644 --- a/docs/methods/real_time_polymerase_chain_reaction.md +++ b/docs/methods/real_time_polymerase_chain_reaction.md @@ -1,4 +1,4 @@ -# [METHOD]: RT-qPCR +# RT-qPCR diff --git a/docs/methods/rna_sequencing.md b/docs/methods/rna_sequencing.md index d90e6faa..dd828e85 100644 --- a/docs/methods/rna_sequencing.md +++ b/docs/methods/rna_sequencing.md @@ -1,4 +1,4 @@ -# [METHOD]: RNA-sequencing +# RNA-sequencing