From 8aac615d2557f56fb065c6abaab342995582dc1b Mon Sep 17 00:00:00 2001 From: marvinm2 Date: Fri, 17 Apr 2026 14:59:37 +0200 Subject: [PATCH 1/4] Retag tool stage with Process Flow Step URIs Assign each tool's stage field to one of the 5 canonical Safety Assessment Workflow Steps (new glossary URIs VHP0000153-158), or "Other" for cross-cutting tools. This aligns the tool catalog with the 5 workflow-step buttons shown on the VHP4Safety /tools page. - CCHI (VHP0000153): 12 tools - Exposure (VHP0000154): 2 tools - Toxicokinetics (VHP0000155): 3 tools - Toxicodynamics (VHP0000156): 17 tools - Adverse Outcome (VHP0000158): 0 tools - Other: 16 tools --- docs/service/aop-builder.json | 2 +- docs/service/aopsuite.json | 2 +- docs/service/aopwiki.json | 2 +- docs/service/aopwikiapi.json | 2 +- docs/service/arrayanalysis.json | 2 +- docs/service/asreview.json | 2 +- docs/service/biomodels.json | 2 +- docs/service/biotransformer.json | 2 +- docs/service/bmdexpress_3.json | 2 +- docs/service/bridgedb.json | 2 +- docs/service/cdk.json | 1 + docs/service/cdkdepict.json | 2 +- docs/service/celldesigner.json | 2 +- docs/service/comptox.json | 2 +- docs/service/copasi.json | 1 + docs/service/cplogd.json | 2 +- docs/service/danish_qsar_database.json | 2 +- docs/service/decimer.json | 2 +- docs/service/dsld.json | 2 +- docs/service/ema_documents.json | 2 +- docs/service/endocrine_disruptome.json | 2 +- docs/service/fairdomhub.json | 2 +- docs/service/fairspace.json | 2 +- docs/service/farmacokompas.json | 2 +- docs/service/flame.json | 2 +- docs/service/google.json | 2 +- docs/service/gscholar.json | 2 +- docs/service/jrc_data_catalogue.json | 2 +- docs/service/llemy.json | 2 +- docs/service/mct8-dock.json | 2 +- docs/service/molaopanalyser.json | 2 +- docs/service/molaopbuilder.json | 2 +- docs/service/oecd_qsar_toolbox.json | 2 +- docs/service/ontox_physiological_maps.json | 1 + docs/service/oppbk_model.json | 2 +- docs/service/opsin.json | 2 +- docs/service/oqt_assistant.json | 2 +- docs/service/pathvisio.json | 1 + docs/service/qaop_app.json | 2 +- docs/service/qsprpred.json | 2 +- docs/service/r_odaf.json | 2 +- docs/service/robot.json | 2 +- docs/service/sombie.json | 2 +- docs/service/sysrev.json | 2 +- docs/service/toxtemp_assistant.json | 2 +- docs/service/txg_mapr.json | 2 +- docs/service/wikibase.json | 2 +- docs/service/wikipathways_aop.json | 2 +- docs/service/xploreaop.json | 2 +- 49 files changed, 49 insertions(+), 45 deletions(-) diff --git a/docs/service/aop-builder.json b/docs/service/aop-builder.json index 818eddd..83259e7 100644 --- a/docs/service/aop-builder.json +++ b/docs/service/aop-builder.json @@ -2,7 +2,7 @@ "id": "aop-builder", "service": "AOP-Builder", "description": "A tool that supports Adverse Outcome Pathway (AOP) development by extracting key scientific entities and their relationships from literature.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage":"https://vhp4safety.github.io/glossary#VHP0000023", "url": "https://crebuilder.vhp4safety.nl", "instance": { diff --git a/docs/service/aopsuite.json b/docs/service/aopsuite.json index 4d7da3b..4901364 100644 --- a/docs/service/aopsuite.json +++ b/docs/service/aopsuite.json @@ -2,7 +2,7 @@ "id": "aopsuite", "service": "AOP-Suite", "description": "A web-based tool for building, visualizing and analyzing Adverse Outcome Pathway (AOP) networks.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "substage": "https://vhp4safety.github.io/glossary#VHP0000023", "screenshot": "aopsuite.png", "url": "", diff --git a/docs/service/aopwiki.json b/docs/service/aopwiki.json index e755d06..1ab6a3e 100644 --- a/docs/service/aopwiki.json +++ b/docs/service/aopwiki.json @@ -2,7 +2,7 @@ "id": "aopwiki", "service": "AOP-Wiki Snorql UI", "description": "A graphical interface for creating, preloading and exporting SPARQL queries tailored to your usecases.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage":"https://vhp4safety.github.io/glossary#VHP0000023", "screenshot": "aopwiki.png", "url": "https://aopwiki.rdf.bigcat-bioinformatics.org/", diff --git a/docs/service/aopwikiapi.json b/docs/service/aopwikiapi.json index aecaba4..b2522ae 100644 --- a/docs/service/aopwikiapi.json +++ b/docs/service/aopwikiapi.json @@ -2,7 +2,7 @@ "id": "aopwikiapi", "service": "AOP-Wiki API", "description": "A REST API for creating and accessing content in the AOP-Wiki database.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage":"https://vhp4safety.github.io/glossary#VHP0000023", "screenshot": "aopwikiapi.png", "url": "https://aopwiki-api.cloud.vhp4safety.nl/api/marvinm2/AOPWikiQueries", diff --git a/docs/service/arrayanalysis.json b/docs/service/arrayanalysis.json index e1e50a1..956b25f 100644 --- a/docs/service/arrayanalysis.json +++ b/docs/service/arrayanalysis.json @@ -2,7 +2,7 @@ "id": "arrayanalysis", "service": "ArrayAnalysis", "description": "A user-interface for preprocessing and statistically analyzing RNA-sequencing and microarray transcriptomics data.", - "stage":"NA", + "stage": "Other", "substage":"NA", "url": "https://arrayanalysis.org/", "screenshot": "arrayanalysis.png", diff --git a/docs/service/asreview.json b/docs/service/asreview.json index 32218ad..6a9e7cb 100644 --- a/docs/service/asreview.json +++ b/docs/service/asreview.json @@ -2,7 +2,7 @@ "id": "asreview", "service": "ASReview", "description": "Open-source active-learning software for transparent and efficient systematic literature reviews.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "https://vhp4safety.github.io/glossary#VHP0000053", "url": "https://asreview.nl/", "doi": "10.1038/s42256-020-00287-7", diff --git a/docs/service/biomodels.json b/docs/service/biomodels.json index d8119af..3c881bf 100644 --- a/docs/service/biomodels.json +++ b/docs/service/biomodels.json @@ -2,7 +2,7 @@ "id": "biomodels", "service": "BioModels", "description": "A repository dedicated to the inventory and acquisition of high-quality mathematical models pertaining to biological and biomedical systems.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "https://vhp4safety.github.io/glossary#VHP0000055", "screenshot": "biomodels.png", "url": "https://www.ebi.ac.uk/biomodels/", diff --git a/docs/service/biotransformer.json b/docs/service/biotransformer.json index 2ab361a..edf9ed2 100644 --- a/docs/service/biotransformer.json +++ b/docs/service/biotransformer.json @@ -2,7 +2,7 @@ "id": "biotransformer", "service": "BioTransformer", "description": "A software tool for predicting metabolites from SMILES-formatted chemical inputs.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000155", "substage": "https://vhp4safety.github.io/glossary#VHP0000148", "screenshot": "biotransformer.png", "url": "https://biotransformer.ca/", diff --git a/docs/service/bmdexpress_3.json b/docs/service/bmdexpress_3.json index c61f7ec..86c2e7d 100644 --- a/docs/service/bmdexpress_3.json +++ b/docs/service/bmdexpress_3.json @@ -3,7 +3,7 @@ "id": "bmdexpress_3", "service": "BMDExpress-3", "description": "A software tool for high-dimensional dose-response modeling and analysis.", - "stage": "", + "stage": "Other", "substage": "", "screenshot": "", "url": "https://github.com/auerbachs/BMDExpress-3", diff --git a/docs/service/bridgedb.json b/docs/service/bridgedb.json index c0dfd12..34686ba 100644 --- a/docs/service/bridgedb.json +++ b/docs/service/bridgedb.json @@ -2,7 +2,7 @@ "id": "bridgedb", "service": "BridgeDb", "description": "A framework for mapping identifiers across biological databases and related sources.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000149", + "stage":"Other", "substage":"https://vhp4safety.github.io/glossary#VHP0000047", "screenshot": "bridgedb.png", "url": "https://www.bridgedb.org/", diff --git a/docs/service/cdk.json b/docs/service/cdk.json index 4c69c18..94fb231 100644 --- a/docs/service/cdk.json +++ b/docs/service/cdk.json @@ -2,6 +2,7 @@ "id": "cdk", "service": "The Chemistry Development Kit", "description": "A Java library for chem- and bioinformatics, with functionality to read/write chemical structures, calculate molecular descriptors, physicochemical properties, substructure and similarity searching, and much more.", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "url": "http://cdk.github.io/", "doi": "10.1186/s13321-017-0220-4", "provider": { diff --git a/docs/service/cdkdepict.json b/docs/service/cdkdepict.json index b475e17..30885fe 100644 --- a/docs/service/cdkdepict.json +++ b/docs/service/cdkdepict.json @@ -2,7 +2,7 @@ "id": "cdkdepict", "service": "CDK Depict", "description": "A webservice for generating chemical structure images from SMILES inputs.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "https://vhp4safety.github.io/glossary#VHP0000148", "screenshot": "cdkdepict.png", "url": "https://www.simolecule.com/cdkdepict/depict.html", diff --git a/docs/service/celldesigner.json b/docs/service/celldesigner.json index 31323ab..2b10898 100644 --- a/docs/service/celldesigner.json +++ b/docs/service/celldesigner.json @@ -2,7 +2,7 @@ "id": "celldesigner", "service": "CellDesigner", "description": "An intuitive user interface for creating gene-regulatory and biochemical network diagrams.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage": "", "screenshot": "celldesigner.png", "url": "https://www.celldesigner.org/", diff --git a/docs/service/comptox.json b/docs/service/comptox.json index 8a62f74..b5b7a50 100644 --- a/docs/service/comptox.json +++ b/docs/service/comptox.json @@ -2,7 +2,7 @@ "id": "comptox", "service": "CompTox", "description": "An online database for searching chemical, toxicity and exposure information.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000148", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "screenshot": "comptox.png", "url": "https://comptox.epa.gov/dashboard/", "doi": "10.1186/s13321-017-0247-6", diff --git a/docs/service/copasi.json b/docs/service/copasi.json index d04c7a2..4349ed2 100644 --- a/docs/service/copasi.json +++ b/docs/service/copasi.json @@ -2,6 +2,7 @@ "id": "copasi", "service": "COPASI", "description": "An open-source software for simulating, analyzing and visualizing biochemical networks using a wide range of methods.", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "screenshot": "copasi.png", "url": "http://copasi.org/", "provider": { diff --git a/docs/service/cplogd.json b/docs/service/cplogd.json index 5fceb16..90cb943 100644 --- a/docs/service/cplogd.json +++ b/docs/service/cplogd.json @@ -2,7 +2,7 @@ "id": "cplogd", "service": "cpLogD", "description": "An online model for predicting water-octanol distribution coefficient (logD) of chemical compounds with confidence estimates.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "https://vhp4safety.github.io/glossary#VHP0000148", "url": "https://cplogd.cloud.vhp4safety.nl/", "doi": "10.1186/s13321-018-0271-1", diff --git a/docs/service/danish_qsar_database.json b/docs/service/danish_qsar_database.json index 6f3718b..5cfd305 100644 --- a/docs/service/danish_qsar_database.json +++ b/docs/service/danish_qsar_database.json @@ -3,7 +3,7 @@ "id": "danish_qsar_database", "service": "Danish (Q)SAR Database", "description": "A freely available (Q)SAR tool for substance evaluations that includes estimates from more than 200 (Q)SARs covering a wide range of hazardous properties relevant for human health and the environment.", - "stage": "", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "", "screenshot": "", "url": "https://qsar.food.dtu.dk/", diff --git a/docs/service/decimer.json b/docs/service/decimer.json index 71982d8..8365602 100644 --- a/docs/service/decimer.json +++ b/docs/service/decimer.json @@ -2,7 +2,7 @@ "id": "decimer", "service": "DECIMER", "description": "An online service for automatically extracting chemical structure depictiions from PDFs and images.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "https://vhp4safety.github.io/glossary#VHP0000148", "screenshot": "decimer.png", "url": "https://decimer.ai/", diff --git a/docs/service/dsld.json b/docs/service/dsld.json index c2db1ac..1e6f63e 100644 --- a/docs/service/dsld.json +++ b/docs/service/dsld.json @@ -5,7 +5,7 @@ "service": "NIH Dietary Supplement Label Database", "description": "An online database from the NIH Office of Dietary Supplements that lets you explore information from more than 200,000 dietary supplement labels sold in the United States.", - "stage": "external exposure", + "stage": "https://vhp4safety.github.io/glossary#VHP0000154", "substage": "compound characteristics", "url": "https://dsld.od.nih.gov/", diff --git a/docs/service/ema_documents.json b/docs/service/ema_documents.json index a25a78c..e088626 100644 --- a/docs/service/ema_documents.json +++ b/docs/service/ema_documents.json @@ -2,7 +2,7 @@ "id": "ema_documents", "service": "European Medicines Agency Documents", "description": "An online repository for inventarisation of official reports from the European Medicines Agency concerning chemical evaluation and safety monitoring.", - "stage": "external exposure", + "stage": "https://vhp4safety.github.io/glossary#VHP0000154", "substage": "compound characteristics", "screenshot": "ema_documents.png", "url": "https://www.ema.europa.eu/en/search", diff --git a/docs/service/endocrine_disruptome.json b/docs/service/endocrine_disruptome.json index 5bf1e5b..b0917b9 100644 --- a/docs/service/endocrine_disruptome.json +++ b/docs/service/endocrine_disruptome.json @@ -3,7 +3,7 @@ "id": "endocrine_disruptome", "service": "Endocrine Disruptome", "description": "An open source, user friendly and web based prediction tool that uses molecular docking to predict binding of compounds to 14 different nuclear receptors.", - "stage": "", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "substage": "", "screenshot": "", "url": "http://endocrinedisruptome.ki.si/", diff --git a/docs/service/fairdomhub.json b/docs/service/fairdomhub.json index 1a77e77..a0d893e 100644 --- a/docs/service/fairdomhub.json +++ b/docs/service/fairdomhub.json @@ -2,7 +2,7 @@ "id": "fairdomhub", "service": "FAIRDOMHub", "description": "A web-accessible registry for managing, sharing and organising research data and research assets.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "", "screenshot": "fairdomhub.png", "url": "https://fairdomhub.org/", diff --git a/docs/service/fairspace.json b/docs/service/fairspace.json index 5b30067..b4da9d3 100644 --- a/docs/service/fairspace.json +++ b/docs/service/fairspace.json @@ -2,7 +2,7 @@ "id": "fairspace", "service": "Fairspace", "description": "An open source RDF-based data management platform for importing and exporting research-relevant metadata", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "https://vhp4safety.github.io/glossary#VHP0000049", "screenshot": "fairspace.png", "url": "https://www.thehyve.nl/services/fairspace", diff --git a/docs/service/farmacokompas.json b/docs/service/farmacokompas.json index 71e3a95..499e80d 100644 --- a/docs/service/farmacokompas.json +++ b/docs/service/farmacokompas.json @@ -4,7 +4,7 @@ "service": "Farmacotherapeutisch Kompas", "description": "A Dutch online resource for gathering data on the pharmacology, adverse effects, and prices of all pharmaceutical products available in the Netherlands.", - "stage": "external exposure", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "compound characteristics", "screenshot": "farmacokompas.png", diff --git a/docs/service/flame.json b/docs/service/flame.json index 380e7ce..55bf8bc 100644 --- a/docs/service/flame.json +++ b/docs/service/flame.json @@ -2,7 +2,7 @@ "id": "flame", "service": "Flame", "description": "An open source web application for building predictive models from biologically annotated chemical structures using predefined workflows.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000149", + "stage":"https://vhp4safety.github.io/glossary#VHP0000153", "substage":"", "url": "https://phi.upf.edu/phi/index.php/software/flame/", "doi": "10.1186/s13321-021-00509-z", diff --git a/docs/service/google.json b/docs/service/google.json index 9a427f6..204b75e 100644 --- a/docs/service/google.json +++ b/docs/service/google.json @@ -7,7 +7,7 @@ "description": "Online search engine for Google.", - "stage": "generic", + "stage": "Other", "substage": "mechanisms of toxicity / compound characteristics", "url": "https://google.com/", diff --git a/docs/service/gscholar.json b/docs/service/gscholar.json index 5a13450..c52717c 100644 --- a/docs/service/gscholar.json +++ b/docs/service/gscholar.json @@ -7,7 +7,7 @@ "description": "An online search engine for (scientific) literature.", - "stage": "generic", + "stage": "Other", "substage": "mechanisms of toxicity / compound characteristics", diff --git a/docs/service/jrc_data_catalogue.json b/docs/service/jrc_data_catalogue.json index 9994e5a..f5d6571 100644 --- a/docs/service/jrc_data_catalogue.json +++ b/docs/service/jrc_data_catalogue.json @@ -2,7 +2,7 @@ "id": "jrc_data_catalogue", "service": "Joint Research Centre Data Catalogue", "description": "An in-house data inventory produced by the Joint Research Centre (JRC) for provision of independent scientific advice and support to policies of the European Union.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "https://vhp4safety.github.io/glossary#VHP0000049", "screenshot": "jrc_data_catalogue.png", "url": "https://data.jrc.ec.europa.eu/", diff --git a/docs/service/llemy.json b/docs/service/llemy.json index 80f414a..cf90bdf 100644 --- a/docs/service/llemy.json +++ b/docs/service/llemy.json @@ -2,7 +2,7 @@ "id": "llemy", "service": "Llemy", "description": "An online tool for answering questions about lipid metabolism and related toxicology/biology using MINERVA pathway knowledge, live web research and AI-generated summaries.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "substage": "prototype", "release_notes": "2025-09-02: Pilot instance; added disclaimer & license surfacing; streamlined login/API-key flow.", "instance": { diff --git a/docs/service/mct8-dock.json b/docs/service/mct8-dock.json index 5431e16..f8aca71 100644 --- a/docs/service/mct8-dock.json +++ b/docs/service/mct8-dock.json @@ -2,7 +2,7 @@ "id": "mct8-dock", "service": "MCT8 Docking for MIE Discovery", "description": "A Python-based notebook for identifying potential MCT8 inhibitors and related molecular events linked to developmental thyroid toxicity from maternal thyroid hormone deprivation.", - "stage": "", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "substage": "", "url": "https://colab.research.google.com/drive/1vhy61p0z_AGnSEidwD83RwBzsW2AxAAT?usp=sharing", "doi": "", diff --git a/docs/service/molaopanalyser.json b/docs/service/molaopanalyser.json index cb80403..538f92c 100644 --- a/docs/service/molaopanalyser.json +++ b/docs/service/molaopanalyser.json @@ -2,7 +2,7 @@ "id": "molaopanalyser", "service": "MolAOP analyser", "description": "An online service for analyzing transcriptomic data in the context of molecular Adverse Outcome Pathways (AOPs), supporting data upload or demo datasets for gene selection, visualization and Key Event (KE) enrichment analysis.", - "stage": "", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "substage": "", "screenshot": "", "url": "https://molaop-analyser.vhp4safety.nl/", diff --git a/docs/service/molaopbuilder.json b/docs/service/molaopbuilder.json index 01f0da0..04dd8bc 100644 --- a/docs/service/molaopbuilder.json +++ b/docs/service/molaopbuilder.json @@ -15,7 +15,7 @@ "description": "A web application for mapping Key Events from Adverse Outcome Pathways to WikiPathways and Gene Ontology Biological Process terms, using intelligent suggestions based on gene overlap, text similarity, and BioBERT semantic embeddings.", "_ins_stage": "Stage / place in the workflow categories", - "stage": "", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "_ins_substage": "Substage for the category", "substage": "", diff --git a/docs/service/oecd_qsar_toolbox.json b/docs/service/oecd_qsar_toolbox.json index 9437f0e..eaceb2d 100644 --- a/docs/service/oecd_qsar_toolbox.json +++ b/docs/service/oecd_qsar_toolbox.json @@ -2,7 +2,7 @@ "id": "oecd_qsar_toolbox", "service": "The OECD QSAR Toolbox", "description": "A software for supporting chemical hazard assessment and enhancing mechanistic knowledge of substances in a cost-effective way.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000056", + "stage":"https://vhp4safety.github.io/glossary#VHP0000153", "substage":"", "screenshot": "oecd_qsar_toolbox.png", "url": "https://qsartoolbox.org/", diff --git a/docs/service/ontox_physiological_maps.json b/docs/service/ontox_physiological_maps.json index 4036ac0..1f629ae 100644 --- a/docs/service/ontox_physiological_maps.json +++ b/docs/service/ontox_physiological_maps.json @@ -2,6 +2,7 @@ "id": "ontox_physiological_maps", "service": "ONTOX Physiological Maps", "description": "Maps for illustrating biological processes behind toxicological risks using a standardized graphical notation.", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "url": "https://sites.google.com/view/ontox-maps/home", "doi": "10.14573/altex.2412241", "instance": { diff --git a/docs/service/oppbk_model.json b/docs/service/oppbk_model.json index 4e12c6c..9a2e23a 100644 --- a/docs/service/oppbk_model.json +++ b/docs/service/oppbk_model.json @@ -2,7 +2,7 @@ "id": "oppbk_model", "service": "OP PBK Model", "description": "An online physiologically based pharmacokinetic model for organophosphates", - "stage":"https://vhp4safety.github.io/glossary#VHP0000056", + "stage":"https://vhp4safety.github.io/glossary#VHP0000155", "substage":"https://vhp4safety.github.io/glossary#VHP0000061", "screenshot": "oppbk_model.png", "url": "http://oppbk.cloud.vhp4safety.nl/", diff --git a/docs/service/opsin.json b/docs/service/opsin.json index 7c04417..9b6bb3d 100644 --- a/docs/service/opsin.json +++ b/docs/service/opsin.json @@ -2,7 +2,7 @@ "id": "opsin", "service": "OPSIN: Open Parser for Systematic IUPAC nomenclature", "description": "An online service for parsing chemical IUPAC names into a machine-readable chemical identifiers.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000148", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "https://vhp4safety.github.io/glossary#VHP0000149", "screenshot": "opsin.png", "url": "https://www.ebi.ac.uk/opsin/", diff --git a/docs/service/oqt_assistant.json b/docs/service/oqt_assistant.json index 5264e74..8d842f2 100644 --- a/docs/service/oqt_assistant.json +++ b/docs/service/oqt_assistant.json @@ -3,7 +3,7 @@ "id": "oqt_assistant", "service": "O-QT — OECD QSAR Toolbox AI Assistant", "description": "An online assistant for using the OECD QSAR Toolbox to analyze chemicals, assess hazards and generate AI-based summary reports.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "substage": "prototype", "screenshot": "oqt_assistant.png", "url": "https://github.com/VHP4Safety/O-QT-OECD-QSAR-Toolbox-AI-assistant", diff --git a/docs/service/pathvisio.json b/docs/service/pathvisio.json index ec52532..9048a76 100644 --- a/docs/service/pathvisio.json +++ b/docs/service/pathvisio.json @@ -3,6 +3,7 @@ "id": "pathvisio", "service": "PathVisio", "description": "Desktop software to visualize, edit, and draw new pathways, which can be exported in the GPML format, for example, to WikiPathways.", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "screenshot": "pcbi.1004085.g004.png", "url": "https://pathvisio.org/", "doi": "10.1371/journal.pcbi.1004085", diff --git a/docs/service/qaop_app.json b/docs/service/qaop_app.json index 1724b30..a67c86b 100644 --- a/docs/service/qaop_app.json +++ b/docs/service/qaop_app.json @@ -2,7 +2,7 @@ "id": "qaop_app", "service": "qAOP-App", "description": "An interactive tool for visualizing and predicting key events (KEs) and adverse outcomes (AOs) over time using ODE-based qAOP models, illustrated with VHP4Safety case studies.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage":"https://vhp4safety.github.io/glossary#VHP0000023", "url": "https://qaop.vhp4safety.nl/", "instance": { diff --git a/docs/service/qsprpred.json b/docs/service/qsprpred.json index 63f33b8..2fa7945 100644 --- a/docs/service/qsprpred.json +++ b/docs/service/qsprpred.json @@ -2,7 +2,7 @@ "id": "qsprpred", "service": "QSPRpred", "description": "An online tool for chemical activity prediction for various endpoints using target-specific and pretrained QSAR models.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000153", "substage":"", "screenshot": "qsprpred.png", "url": "https://qsprpred.cloud.vhp4safety.nl/", diff --git a/docs/service/r_odaf.json b/docs/service/r_odaf.json index 3c5ee14..8640a00 100644 --- a/docs/service/r_odaf.json +++ b/docs/service/r_odaf.json @@ -3,7 +3,7 @@ "id": "r_odaf", "service": "R-ODAF Shiny", "description": "An R Shiny interface for the R-ODAF framework that provides standardised RNA-seq differential expression analysis for regulatory toxicology applications.", - "stage": "Toxicodynamics/AOP", + "stage": "Other", "substage": "Transcriptomics / Differential Expression", "screenshot": "r_odaf.png", "instance": { diff --git a/docs/service/robot.json b/docs/service/robot.json index eb0f676..f824694 100644 --- a/docs/service/robot.json +++ b/docs/service/robot.json @@ -3,7 +3,7 @@ "id": "robot", "service": "ROBOT", "description": "Research Object Builder for Open Toxicology.", - "stage": "", + "stage": "Other", "substage": "", "screenshot": "", "url": "", diff --git a/docs/service/sombie.json b/docs/service/sombie.json index 5acd228..69594a5 100644 --- a/docs/service/sombie.json +++ b/docs/service/sombie.json @@ -2,7 +2,7 @@ "id": "sombie", "service": "SOM Prediction", "description": "A webservice for prediction of protein-structure and reactivity based (P450) site-of-metabolism.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000056", + "stage": "https://vhp4safety.github.io/glossary#VHP0000155", "url": "https://sombie.cloud.vhp4safety.nl/", "instance": { "type": "internal", diff --git a/docs/service/sysrev.json b/docs/service/sysrev.json index fd8cff8..633bde5 100644 --- a/docs/service/sysrev.json +++ b/docs/service/sysrev.json @@ -2,7 +2,7 @@ "id": "sysrev", "service": "SysRev", "description": "An online service for conduction of literature review, data extraction and systematic review.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "https://vhp4safety.github.io/glossary#VHP0000053", "url": "https://sysrev.com/", "doi": "10.3389/frai.2021.685298", diff --git a/docs/service/toxtemp_assistant.json b/docs/service/toxtemp_assistant.json index d7b0434..5909240 100644 --- a/docs/service/toxtemp_assistant.json +++ b/docs/service/toxtemp_assistant.json @@ -3,7 +3,7 @@ "id": "toxtemp_assistant", "service": "ToxTempAssistant", "description": "An online tool for harmonizing in vitro toxicity test methods using Large Language Models, based on the ToxTemp template where it extracts details from protocols, publications or lab notes to create structured draft responses.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "Other", "substage": "", "screenshot": "toxtemp_assistant.png", "url": "https://toxtempassistant.vhp4safety.nl/", diff --git a/docs/service/txg_mapr.json b/docs/service/txg_mapr.json index 0b29d17..fbea0b7 100644 --- a/docs/service/txg_mapr.json +++ b/docs/service/txg_mapr.json @@ -2,7 +2,7 @@ "id": "txg_mapr", "service": "TXG-MAPr", "description": "An online application for implementation of weighted gene co-expression network analysis (WGCNA) derived from publicly available transcriptomic datasets from the TG-GATEs database.", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage": "https://vhp4safety.github.io/glossary#VHP0000018", "screenshot": "txg_mapr.png", "url": "https://txg-mapr.eu/", diff --git a/docs/service/wikibase.json b/docs/service/wikibase.json index f352514..6827f55 100644 --- a/docs/service/wikibase.json +++ b/docs/service/wikibase.json @@ -2,7 +2,7 @@ "id": "wikibase", "service": "VHP4Safety Wikibase", "description": "A Wikibase instance for storing and presenting information about toxic, safe and potentially toxic compounds related to the VHP4Safety project.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "substage": "https://vhp4safety.github.io/glossary#VHP0000148", "screenshot": "VHP4Safety_ChemicalCompounds.png", "url": "https://compoundcloud.wikibase.cloud/", diff --git a/docs/service/wikipathways_aop.json b/docs/service/wikipathways_aop.json index fd71e40..f436c60 100644 --- a/docs/service/wikipathways_aop.json +++ b/docs/service/wikipathways_aop.json @@ -2,7 +2,7 @@ "id": "wikipathways_aop", "service": "WikiPathways - AOP Portal", "description": "An Adverse Outcome Pathway (AOP) portal on WikiPathways for exploring the molecular basis of AOPs and their key events (KEs).", - "stage":"https://vhp4safety.github.io/glossary#VHP0000102", + "stage":"https://vhp4safety.github.io/glossary#VHP0000156", "substage":"https://vhp4safety.github.io/glossary#VHP0000023", "screenshot": "wikipathways_aop.png", "url": "https://aop.wikipathways.org/", diff --git a/docs/service/xploreaop.json b/docs/service/xploreaop.json index 987cfff..f171ec7 100644 --- a/docs/service/xploreaop.json +++ b/docs/service/xploreaop.json @@ -2,7 +2,7 @@ "id": "xploreaop", "service": "xploreaop", "description": "A web application for visualization of Adverse Outcome Pathway (AOP) networks and interactive exploration of AOPs for two liver outcomes.", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "substage": "https://vhp4safety.github.io/glossary#VHP0000023", "url": "https://xploreaop.cloud.vhp4safety.nl/", "instance": { From d905d89961d62a9aa607fea676c48d0f0d0a1fa4 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Fri, 17 Apr 2026 13:04:51 +0000 Subject: [PATCH 2/4] Updated service meta-data collection --- cap/service_index.json | 98 +++++++++++++++++++++--------------------- 1 file changed, 49 insertions(+), 49 deletions(-) diff --git a/cap/service_index.json b/cap/service_index.json index a8f78f4..8d02922 100644 --- a/cap/service_index.json +++ b/cap/service_index.json @@ -6,7 +6,7 @@ "html_name": "aop-builder.html", "md_file_name": "aop-builder.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://crebuilder.vhp4safety.nl", "inst_url": "https://crebuilder.vhp4safety.nl", "reg_q_1a": "false", @@ -23,7 +23,7 @@ "html_name": "aopsuite.html", "md_file_name": "aopsuite.md", "png_file_name": "aopsuite.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "no_url", "inst_url": "https://aopsuite.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -40,7 +40,7 @@ "html_name": "aopwikiapi.html", "md_file_name": "aopwikiapi.md", "png_file_name": "aopwikiapi.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://aopwiki-api.cloud.vhp4safety.nl/api/marvinm2/AOPWikiQueries", "inst_url": "https://aopwiki-api.cloud.vhp4safety.nl/api/marvinm2/AOPWikiQueries", "reg_q_1a": "false", @@ -57,7 +57,7 @@ "html_name": "aopwiki.html", "md_file_name": "aopwiki.md", "png_file_name": "aopwiki.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://aopwiki.rdf.bigcat-bioinformatics.org/", "inst_url": "https://aopwiki.rdf.bigcat-bioinformatics.org/", "reg_q_1a": "false", @@ -74,7 +74,7 @@ "html_name": "arrayanalysis.html", "md_file_name": "arrayanalysis.md", "png_file_name": "arrayanalysis.png", - "stage": "NA", + "stage": "Other", "main_url": "https://arrayanalysis.org/", "inst_url": "https://arrayanalysis.vhp4safety.nl/", "reg_q_1a": "false", @@ -91,7 +91,7 @@ "html_name": "asreview.html", "md_file_name": "asreview.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://asreview.nl/", "inst_url": "no_url", "reg_q_1a": "false", @@ -108,7 +108,7 @@ "html_name": "biomodels.html", "md_file_name": "biomodels.md", "png_file_name": "biomodels.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://www.ebi.ac.uk/biomodels/", "inst_url": "no_url", "reg_q_1a": "false", @@ -125,7 +125,7 @@ "html_name": "biotransformer.html", "md_file_name": "biotransformer.md", "png_file_name": "biotransformer.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000155", "main_url": "https://biotransformer.ca/", "inst_url": "no_url", "reg_q_1a": "false", @@ -142,7 +142,7 @@ "html_name": "bmdexpress_3.html", "md_file_name": "bmdexpress_3.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "Other", "main_url": "https://github.com/auerbachs/BMDExpress-3", "inst_url": "no_url", "reg_q_1a": "", @@ -159,7 +159,7 @@ "html_name": "bridgedb.html", "md_file_name": "bridgedb.md", "png_file_name": "bridgedb.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://www.bridgedb.org/", "inst_url": "https://bridgedb.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -176,7 +176,7 @@ "html_name": "cdkdepict.html", "md_file_name": "cdkdepict.md", "png_file_name": "cdkdepict.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://www.simolecule.com/cdkdepict/depict.html", "inst_url": "https://cdkdepict.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -193,7 +193,7 @@ "html_name": "celldesigner.html", "md_file_name": "celldesigner.md", "png_file_name": "celldesigner.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://www.celldesigner.org/", "inst_url": "no_url", "reg_q_1a": "false", @@ -210,7 +210,7 @@ "html_name": "comptox.html", "md_file_name": "comptox.md", "png_file_name": "comptox.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000148", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://comptox.epa.gov/dashboard/", "inst_url": "no_url", "reg_q_1a": "false", @@ -227,7 +227,7 @@ "html_name": "copasi.html", "md_file_name": "copasi.md", "png_file_name": "copasi.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "http://copasi.org/", "inst_url": "no_url", "reg_q_1a": "false", @@ -244,7 +244,7 @@ "html_name": "cplogd.html", "md_file_name": "cplogd.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://cplogd.cloud.vhp4safety.nl/", "inst_url": "https://cplogd.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -261,7 +261,7 @@ "html_name": "danish_qsar_database.html", "md_file_name": "danish_qsar_database.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://qsar.food.dtu.dk/", "inst_url": "no_url", "reg_q_1a": "false", @@ -278,7 +278,7 @@ "html_name": "decimer.html", "md_file_name": "decimer.md", "png_file_name": "decimer.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://decimer.ai/", "inst_url": "no_url", "reg_q_1a": "false", @@ -295,7 +295,7 @@ "html_name": "endocrine_disruptome.html", "md_file_name": "endocrine_disruptome.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "http://endocrinedisruptome.ki.si/", "inst_url": "no_url", "reg_q_1a": "false", @@ -312,7 +312,7 @@ "html_name": "ema_documents.html", "md_file_name": "ema_documents.md", "png_file_name": "ema_documents.png", - "stage": "external exposure", + "stage": "https://vhp4safety.github.io/glossary#VHP0000154", "main_url": "https://www.ema.europa.eu/en/search", "inst_url": "no_url", "reg_q_1a": "false", @@ -329,7 +329,7 @@ "html_name": "fairdomhub.html", "md_file_name": "fairdomhub.md", "png_file_name": "fairdomhub.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://fairdomhub.org/", "inst_url": "no_url", "reg_q_1a": "false", @@ -346,7 +346,7 @@ "html_name": "fairspace.html", "md_file_name": "fairspace.md", "png_file_name": "fairspace.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://www.thehyve.nl/services/fairspace", "inst_url": "no_url", "reg_q_1a": "false", @@ -363,7 +363,7 @@ "html_name": "farmacokompas.html", "md_file_name": "farmacokompas.md", "png_file_name": "farmacokompas.png", - "stage": "external exposure", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://www.farmacotherapeutischkompas.nl/", "inst_url": "no_url", "reg_q_1a": "true", @@ -380,7 +380,7 @@ "html_name": "flame.html", "md_file_name": "flame.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://phi.upf.edu/phi/index.php/software/flame/", "inst_url": "http://flame.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -397,7 +397,7 @@ "html_name": "gscholar.html", "md_file_name": "gscholar.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "generic", + "stage": "Other", "main_url": "https://scholar.google.com/", "inst_url": "no_url", "reg_q_1a": "false", @@ -414,7 +414,7 @@ "html_name": "google.html", "md_file_name": "google.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "generic", + "stage": "Other", "main_url": "https://google.com/", "inst_url": "no_url", "reg_q_1a": "false", @@ -431,7 +431,7 @@ "html_name": "jrc_data_catalogue.html", "md_file_name": "jrc_data_catalogue.md", "png_file_name": "jrc_data_catalogue.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://data.jrc.ec.europa.eu/", "inst_url": "no_url", "reg_q_1a": "false", @@ -448,7 +448,7 @@ "html_name": "llemy.html", "md_file_name": "llemy.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "no_url", "inst_url": "https://llemy.vhp4safety.nl/", "reg_q_1a": "false", @@ -465,7 +465,7 @@ "html_name": "mct8-dock.html", "md_file_name": "mct8-dock.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://colab.research.google.com/drive/1vhy61p0z_AGnSEidwD83RwBzsW2AxAAT?usp=sharing", "inst_url": "no_url", "reg_q_1a": "", @@ -482,7 +482,7 @@ "html_name": "molaopanalyser.html", "md_file_name": "molaopanalyser.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://molaop-analyser.vhp4safety.nl/", "inst_url": "https://molaop-analyser.vhp4safety.nl/", "reg_q_1a": "", @@ -499,7 +499,7 @@ "html_name": "molaopbuilder.html", "md_file_name": "molaopbuilder.md", "png_file_name": "molaopbuilder.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://github.com/marvinm2/KE-WP-mapping", "inst_url": "https://molaop-builder.vhp4safety.nl/", "reg_q_1a": "", @@ -516,7 +516,7 @@ "html_name": "dsld.html", "md_file_name": "dsld.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "external exposure", + "stage": "https://vhp4safety.github.io/glossary#VHP0000154", "main_url": "https://dsld.od.nih.gov/", "inst_url": "no_url", "reg_q_1a": "false", @@ -533,7 +533,7 @@ "html_name": "oqt_assistant.html", "md_file_name": "oqt_assistant.md", "png_file_name": "oqt_assistant.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://github.com/VHP4Safety/O-QT-OECD-QSAR-Toolbox-AI-assistant", "inst_url": "https://o-qt-oecd.vhp4safety.nl/", "reg_q_1a": "false", @@ -550,7 +550,7 @@ "html_name": "ontox_physiological_maps.html", "md_file_name": "ontox_physiological_maps.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://sites.google.com/view/ontox-maps/home", "inst_url": "no_url", "reg_q_1a": "false", @@ -567,7 +567,7 @@ "html_name": "oppbk_model.html", "md_file_name": "oppbk_model.md", "png_file_name": "oppbk_model.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000056", + "stage": "https://vhp4safety.github.io/glossary#VHP0000155", "main_url": "http://oppbk.cloud.vhp4safety.nl/", "inst_url": "http://oppbk.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -584,7 +584,7 @@ "html_name": "opsin.html", "md_file_name": "opsin.md", "png_file_name": "opsin.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000148", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://www.ebi.ac.uk/opsin/", "inst_url": "no_url", "reg_q_1a": "false", @@ -601,7 +601,7 @@ "html_name": "pathvisio.html", "md_file_name": "pathvisio.md", "png_file_name": "pcbi.1004085.g004.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://pathvisio.org/", "inst_url": "no_url", "reg_q_1a": "false", @@ -618,7 +618,7 @@ "html_name": "qaop_app.html", "md_file_name": "qaop_app.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://qaop.vhp4safety.nl/", "inst_url": "https://qaop.vhp4safety.nl/", "reg_q_1a": "false", @@ -635,7 +635,7 @@ "html_name": "qsprpred.html", "md_file_name": "qsprpred.md", "png_file_name": "qsprpred.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://qsprpred.cloud.vhp4safety.nl/", "inst_url": "https://qsprpred.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -652,7 +652,7 @@ "html_name": "r_odaf.html", "md_file_name": "r_odaf.md", "png_file_name": "r_odaf.png", - "stage": "Toxicodynamics/AOP", + "stage": "Other", "main_url": "no_url", "inst_url": "https://r-odaf.nl/", "reg_q_1a": "false", @@ -669,7 +669,7 @@ "html_name": "robot.html", "md_file_name": "robot.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "Other", "main_url": "no_url", "inst_url": "https://robot.vhp4safety.nl/ui", "reg_q_1a": "", @@ -686,7 +686,7 @@ "html_name": "sombie.html", "md_file_name": "sombie.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000056", + "stage": "https://vhp4safety.github.io/glossary#VHP0000155", "main_url": "https://sombie.cloud.vhp4safety.nl/", "inst_url": "https://sombie.cloud.vhp4safety.nl/", "reg_q_1a": "false", @@ -703,7 +703,7 @@ "html_name": "sysrev.html", "md_file_name": "sysrev.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://sysrev.com/", "inst_url": "no_url", "reg_q_1a": "false", @@ -720,7 +720,7 @@ "html_name": "cdk.html", "md_file_name": "cdk.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "Unknown", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "http://cdk.github.io/", "inst_url": "no_url", "reg_q_1a": "false", @@ -737,7 +737,7 @@ "html_name": "oecd_qsar_toolbox.html", "md_file_name": "oecd_qsar_toolbox.md", "png_file_name": "oecd_qsar_toolbox.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000056", + "stage": "https://vhp4safety.github.io/glossary#VHP0000153", "main_url": "https://qsartoolbox.org/", "inst_url": "no_url", "reg_q_1a": "false", @@ -754,7 +754,7 @@ "html_name": "toxtemp_assistant.html", "md_file_name": "toxtemp_assistant.md", "png_file_name": "toxtemp_assistant.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "Other", "main_url": "https://toxtempassistant.vhp4safety.nl/", "inst_url": "https://toxtempassistant.vhp4safety.nl/", "reg_q_1a": "false", @@ -771,7 +771,7 @@ "html_name": "txg_mapr.html", "md_file_name": "txg_mapr.md", "png_file_name": "txg_mapr.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://txg-mapr.eu/", "inst_url": "no_url", "reg_q_1a": "false", @@ -805,7 +805,7 @@ "html_name": "wikibase.html", "md_file_name": "wikibase.md", "png_file_name": "VHP4Safety_ChemicalCompounds.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000149", + "stage": "Other", "main_url": "https://compoundcloud.wikibase.cloud/", "inst_url": "no_url", "reg_q_1a": "false", @@ -822,7 +822,7 @@ "html_name": "wikipathways_aop.html", "md_file_name": "wikipathways_aop.md", "png_file_name": "wikipathways_aop.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://aop.wikipathways.org/", "inst_url": "no_url", "reg_q_1a": "false", @@ -839,7 +839,7 @@ "html_name": "xploreaop.html", "md_file_name": "xploreaop.md", "png_file_name": "https://github.com/VHP4Safety/ui-design/blob/main/static/images/logo.png", - "stage": "https://vhp4safety.github.io/glossary#VHP0000102", + "stage": "https://vhp4safety.github.io/glossary#VHP0000156", "main_url": "https://xploreaop.cloud.vhp4safety.nl/", "inst_url": "https://xploreaop.cloud.vhp4safety.nl/", "reg_q_1a": "false", From 141dda0ad8b7c9ed711eb442c88f7a1070235d56 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Fri, 17 Apr 2026 13:05:23 +0000 Subject: [PATCH 3/4] Updated service Markdown --- docs/service/aop-builder.md | 2 +- docs/service/aopsuite.md | 2 +- docs/service/aopwiki.md | 2 +- docs/service/aopwikiapi.md | 2 +- docs/service/arrayanalysis.md | 2 +- docs/service/asreview.md | 2 +- docs/service/biomodels.md | 2 +- docs/service/biotransformer.md | 2 +- docs/service/bmdexpress_3.md | 2 +- docs/service/bridgedb.md | 2 +- docs/service/cdk.md | 4 ++-- docs/service/cdkdepict.md | 2 +- docs/service/celldesigner.md | 2 +- docs/service/comptox.md | 2 +- docs/service/copasi.md | 4 ++-- docs/service/cplogd.md | 2 +- docs/service/danish_qsar_database.md | 2 +- docs/service/decimer.md | 2 +- docs/service/dsld.md | 2 +- docs/service/ema_documents.md | 2 +- docs/service/endocrine_disruptome.md | 2 +- docs/service/fairdomhub.md | 2 +- docs/service/fairspace.md | 2 +- docs/service/farmacokompas.md | 2 +- docs/service/flame.md | 2 +- docs/service/google.md | 2 +- docs/service/gscholar.md | 2 +- docs/service/jrc_data_catalogue.md | 2 +- docs/service/llemy.md | 2 +- docs/service/mct8-dock.md | 2 +- docs/service/molaopanalyser.md | 2 +- docs/service/molaopbuilder.md | 2 +- docs/service/oecd_qsar_toolbox.md | 2 +- docs/service/ontox_physiological_maps.md | 4 ++-- docs/service/oppbk_model.md | 2 +- docs/service/opsin.md | 2 +- docs/service/oqt_assistant.md | 2 +- docs/service/pathvisio.md | 4 ++-- docs/service/qaop_app.md | 2 +- docs/service/qsprpred.md | 2 +- docs/service/r_odaf.md | 2 +- docs/service/robot.md | 2 +- docs/service/sombie.md | 2 +- docs/service/sysrev.md | 2 +- docs/service/toxtemp_assistant.md | 2 +- docs/service/txg_mapr.md | 2 +- docs/service/wikibase.md | 2 +- docs/service/wikipathways_aop.md | 2 +- docs/service/xploreaop.md | 2 +- docs/sitemap.xml | 2 +- 50 files changed, 54 insertions(+), 54 deletions(-) diff --git a/docs/service/aop-builder.md b/docs/service/aop-builder.md index 0bb0291..a58e526 100644 --- a/docs/service/aop-builder.md +++ b/docs/service/aop-builder.md @@ -51,7 +51,7 @@ A tool that supports Adverse Outcome Pathway (AOP) development by extracting key ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/aopsuite.md b/docs/service/aopsuite.md index ca5c0d1..229db94 100644 --- a/docs/service/aopsuite.md +++ b/docs/service/aopsuite.md @@ -52,7 +52,7 @@ A web-based tool for building, visualizing and analyzing Adverse Outcome Pathway ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/aopwiki.md b/docs/service/aopwiki.md index 1ed0423..bdbd8f7 100644 --- a/docs/service/aopwiki.md +++ b/docs/service/aopwiki.md @@ -53,7 +53,7 @@ A graphical interface for creating, preloading and exporting SPARQL queries tail ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/aopwikiapi.md b/docs/service/aopwikiapi.md index 3f5de5a..90c3a58 100644 --- a/docs/service/aopwikiapi.md +++ b/docs/service/aopwikiapi.md @@ -53,7 +53,7 @@ A REST API for creating and accessing content in the AOP-Wiki database. ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/arrayanalysis.md b/docs/service/arrayanalysis.md index 35aa66b..ae7e3c4 100644 --- a/docs/service/arrayanalysis.md +++ b/docs/service/arrayanalysis.md @@ -53,7 +53,7 @@ A user-interface for preprocessing and statistically analyzing RNA-sequencing an ## VHP4Safety Service Metadata -* Stage: NA +* Stage: Other * Sub-Stage: NA diff --git a/docs/service/asreview.md b/docs/service/asreview.md index 89147a6..1178aba 100644 --- a/docs/service/asreview.md +++ b/docs/service/asreview.md @@ -50,7 +50,7 @@ Open-source active-learning software for transparent and efficient systematic li ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000053 diff --git a/docs/service/biomodels.md b/docs/service/biomodels.md index ccd8ded..764ced7 100644 --- a/docs/service/biomodels.md +++ b/docs/service/biomodels.md @@ -52,7 +52,7 @@ A repository dedicated to the inventory and acquisition of high-quality mathemat ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000055 diff --git a/docs/service/biotransformer.md b/docs/service/biotransformer.md index 9cf1260..07194a6 100644 --- a/docs/service/biotransformer.md +++ b/docs/service/biotransformer.md @@ -51,7 +51,7 @@ A software tool for predicting metabolites from SMILES-formatted chemical inputs ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: https://vhp4safety.github.io/glossary#VHP0000155 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/bmdexpress_3.md b/docs/service/bmdexpress_3.md index 6c901f0..cefb781 100644 --- a/docs/service/bmdexpress_3.md +++ b/docs/service/bmdexpress_3.md @@ -51,7 +51,7 @@ A software tool for high-dimensional dose-response modeling and analysis. ## VHP4Safety Service Metadata -* Stage: +* Stage: Other * Sub-Stage: diff --git a/docs/service/bridgedb.md b/docs/service/bridgedb.md index 937a493..974357d 100644 --- a/docs/service/bridgedb.md +++ b/docs/service/bridgedb.md @@ -53,7 +53,7 @@ A framework for mapping identifiers across biological databases and related sour ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000047 diff --git a/docs/service/cdk.md b/docs/service/cdk.md index 6887261..201da14 100644 --- a/docs/service/cdk.md +++ b/docs/service/cdk.md @@ -50,9 +50,9 @@ A Java library for chem- and bioinformatics, with functionality to read/write ch ## VHP4Safety Service Metadata -* Stage: Not available +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 -* Sub-Stage: Not available +* Sub-Stage: * Development Cloud: Not available diff --git a/docs/service/cdkdepict.md b/docs/service/cdkdepict.md index 6e82b7a..5b8c2ed 100644 --- a/docs/service/cdkdepict.md +++ b/docs/service/cdkdepict.md @@ -53,7 +53,7 @@ A webservice for generating chemical structure images from SMILES inputs. ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/celldesigner.md b/docs/service/celldesigner.md index b76d1cd..a47fb1d 100644 --- a/docs/service/celldesigner.md +++ b/docs/service/celldesigner.md @@ -52,7 +52,7 @@ An intuitive user interface for creating gene-regulatory and biochemical network ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: diff --git a/docs/service/comptox.md b/docs/service/comptox.md index ffe374f..8ea34e9 100644 --- a/docs/service/comptox.md +++ b/docs/service/comptox.md @@ -52,7 +52,7 @@ An online database for searching chemical, toxicity and exposure information. ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000148 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: diff --git a/docs/service/copasi.md b/docs/service/copasi.md index 18a1242..f211ae7 100644 --- a/docs/service/copasi.md +++ b/docs/service/copasi.md @@ -51,9 +51,9 @@ An open-source software for simulating, analyzing and visualizing biochemical ne ## VHP4Safety Service Metadata -* Stage: Not available +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 -* Sub-Stage: Not available +* Sub-Stage: * Development Cloud: Not available diff --git a/docs/service/cplogd.md b/docs/service/cplogd.md index 72c2330..9dbc669 100644 --- a/docs/service/cplogd.md +++ b/docs/service/cplogd.md @@ -52,7 +52,7 @@ An online model for predicting water-octanol distribution coefficient (logD) of ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/danish_qsar_database.md b/docs/service/danish_qsar_database.md index f40be03..974343a 100644 --- a/docs/service/danish_qsar_database.md +++ b/docs/service/danish_qsar_database.md @@ -51,7 +51,7 @@ A freely available (Q)SAR tool for substance evaluations that includes estimates ## VHP4Safety Service Metadata -* Stage: +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: diff --git a/docs/service/decimer.md b/docs/service/decimer.md index 151cb8a..b1134ed 100644 --- a/docs/service/decimer.md +++ b/docs/service/decimer.md @@ -52,7 +52,7 @@ An online service for automatically extracting chemical structure depictiions fr ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/dsld.md b/docs/service/dsld.md index 26b5d87..5c53899 100644 --- a/docs/service/dsld.md +++ b/docs/service/dsld.md @@ -51,7 +51,7 @@ An online database from the NIH Office of Dietary Supplements that lets you expl ## VHP4Safety Service Metadata -* Stage: external exposure +* Stage: https://vhp4safety.github.io/glossary#VHP0000154 * Sub-Stage: compound characteristics diff --git a/docs/service/ema_documents.md b/docs/service/ema_documents.md index c4e8adb..2de7905 100644 --- a/docs/service/ema_documents.md +++ b/docs/service/ema_documents.md @@ -52,7 +52,7 @@ An online repository for inventarisation of official reports from the European M ## VHP4Safety Service Metadata -* Stage: external exposure +* Stage: https://vhp4safety.github.io/glossary#VHP0000154 * Sub-Stage: compound characteristics diff --git a/docs/service/endocrine_disruptome.md b/docs/service/endocrine_disruptome.md index f9b79b0..52c338b 100644 --- a/docs/service/endocrine_disruptome.md +++ b/docs/service/endocrine_disruptome.md @@ -51,7 +51,7 @@ An open source, user friendly and web based prediction tool that uses molecular ## VHP4Safety Service Metadata -* Stage: +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: diff --git a/docs/service/fairdomhub.md b/docs/service/fairdomhub.md index 767fce8..c8e0292 100644 --- a/docs/service/fairdomhub.md +++ b/docs/service/fairdomhub.md @@ -52,7 +52,7 @@ A web-accessible registry for managing, sharing and organising research data and ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: diff --git a/docs/service/fairspace.md b/docs/service/fairspace.md index 73e6bf6..b25455e 100644 --- a/docs/service/fairspace.md +++ b/docs/service/fairspace.md @@ -52,7 +52,7 @@ An open source RDF-based data management platform for importing and exporting re ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000049 diff --git a/docs/service/farmacokompas.md b/docs/service/farmacokompas.md index 3b3f779..0cd33d9 100644 --- a/docs/service/farmacokompas.md +++ b/docs/service/farmacokompas.md @@ -52,7 +52,7 @@ A Dutch online resource for gathering data on the pharmacology, adverse effects, ## VHP4Safety Service Metadata -* Stage: external exposure +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: compound characteristics diff --git a/docs/service/flame.md b/docs/service/flame.md index 297e294..fc03ef0 100644 --- a/docs/service/flame.md +++ b/docs/service/flame.md @@ -51,7 +51,7 @@ An open source web application for building predictive models from biologically ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: diff --git a/docs/service/google.md b/docs/service/google.md index 8ac99bf..41bf811 100644 --- a/docs/service/google.md +++ b/docs/service/google.md @@ -51,7 +51,7 @@ Online search engine for Google. ## VHP4Safety Service Metadata -* Stage: generic +* Stage: Other * Sub-Stage: mechanisms of toxicity / compound characteristics diff --git a/docs/service/gscholar.md b/docs/service/gscholar.md index ca0d584..e06cee5 100644 --- a/docs/service/gscholar.md +++ b/docs/service/gscholar.md @@ -51,7 +51,7 @@ An online search engine for (scientific) literature. ## VHP4Safety Service Metadata -* Stage: generic +* Stage: Other * Sub-Stage: mechanisms of toxicity / compound characteristics diff --git a/docs/service/jrc_data_catalogue.md b/docs/service/jrc_data_catalogue.md index b14bb8d..9d22a2c 100644 --- a/docs/service/jrc_data_catalogue.md +++ b/docs/service/jrc_data_catalogue.md @@ -52,7 +52,7 @@ An in-house data inventory produced by the Joint Research Centre (JRC) for provi ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000049 diff --git a/docs/service/llemy.md b/docs/service/llemy.md index d6c78c9..66b0131 100644 --- a/docs/service/llemy.md +++ b/docs/service/llemy.md @@ -51,7 +51,7 @@ An online tool for answering questions about lipid metabolism and related toxico ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: prototype diff --git a/docs/service/mct8-dock.md b/docs/service/mct8-dock.md index f7c642b..2de0e58 100644 --- a/docs/service/mct8-dock.md +++ b/docs/service/mct8-dock.md @@ -51,7 +51,7 @@ A Python-based notebook for identifying potential MCT8 inhibitors and related mo ## VHP4Safety Service Metadata -* Stage: +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: diff --git a/docs/service/molaopanalyser.md b/docs/service/molaopanalyser.md index 8a4be53..f9db80e 100644 --- a/docs/service/molaopanalyser.md +++ b/docs/service/molaopanalyser.md @@ -52,7 +52,7 @@ An online service for analyzing transcriptomic data in the context of molecular ## VHP4Safety Service Metadata -* Stage: +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: diff --git a/docs/service/molaopbuilder.md b/docs/service/molaopbuilder.md index 18378d6..0dfaa66 100644 --- a/docs/service/molaopbuilder.md +++ b/docs/service/molaopbuilder.md @@ -53,7 +53,7 @@ A web application for mapping Key Events from Adverse Outcome Pathways to WikiPa ## VHP4Safety Service Metadata -* Stage: +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: diff --git a/docs/service/oecd_qsar_toolbox.md b/docs/service/oecd_qsar_toolbox.md index 516ae8d..0a74125 100644 --- a/docs/service/oecd_qsar_toolbox.md +++ b/docs/service/oecd_qsar_toolbox.md @@ -52,7 +52,7 @@ A software for supporting chemical hazard assessment and enhancing mechanistic k ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000056 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: diff --git a/docs/service/ontox_physiological_maps.md b/docs/service/ontox_physiological_maps.md index 8360e68..56cb544 100644 --- a/docs/service/ontox_physiological_maps.md +++ b/docs/service/ontox_physiological_maps.md @@ -51,9 +51,9 @@ Maps for illustrating biological processes behind toxicological risks using a st ## VHP4Safety Service Metadata -* Stage: Not available +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 -* Sub-Stage: Not available +* Sub-Stage: * Development Cloud: Not available diff --git a/docs/service/oppbk_model.md b/docs/service/oppbk_model.md index 2231458..e8cc0c2 100644 --- a/docs/service/oppbk_model.md +++ b/docs/service/oppbk_model.md @@ -52,7 +52,7 @@ An online physiologically based pharmacokinetic model for organophosphates ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000056 +* Stage: https://vhp4safety.github.io/glossary#VHP0000155 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000061 diff --git a/docs/service/opsin.md b/docs/service/opsin.md index d3aa729..2dcc7e5 100644 --- a/docs/service/opsin.md +++ b/docs/service/opsin.md @@ -51,7 +51,7 @@ An online service for parsing chemical IUPAC names into a machine-readable chemi ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000148 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000149 diff --git a/docs/service/oqt_assistant.md b/docs/service/oqt_assistant.md index 61606fc..fd70769 100644 --- a/docs/service/oqt_assistant.md +++ b/docs/service/oqt_assistant.md @@ -53,7 +53,7 @@ An online assistant for using the OECD QSAR Toolbox to analyze chemicals, assess ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: prototype diff --git a/docs/service/pathvisio.md b/docs/service/pathvisio.md index 396aa33..b1a7f93 100644 --- a/docs/service/pathvisio.md +++ b/docs/service/pathvisio.md @@ -52,9 +52,9 @@ Desktop software to visualize, edit, and draw new pathways, which can be exporte ## VHP4Safety Service Metadata -* Stage: Not available +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 -* Sub-Stage: Not available +* Sub-Stage: * Development Cloud: Not available diff --git a/docs/service/qaop_app.md b/docs/service/qaop_app.md index 97eab42..2bb81ae 100644 --- a/docs/service/qaop_app.md +++ b/docs/service/qaop_app.md @@ -52,7 +52,7 @@ An interactive tool for visualizing and predicting key events (KEs) and adverse ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/qsprpred.md b/docs/service/qsprpred.md index b3afd8c..17fa495 100644 --- a/docs/service/qsprpred.md +++ b/docs/service/qsprpred.md @@ -53,7 +53,7 @@ An online tool for chemical activity prediction for various endpoints using targ ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000153 * Sub-Stage: diff --git a/docs/service/r_odaf.md b/docs/service/r_odaf.md index b9367da..ce6839c 100644 --- a/docs/service/r_odaf.md +++ b/docs/service/r_odaf.md @@ -52,7 +52,7 @@ An R Shiny interface for the R-ODAF framework that provides standardised RNA-seq ## VHP4Safety Service Metadata -* Stage: Toxicodynamics/AOP +* Stage: Other * Sub-Stage: Transcriptomics / Differential Expression diff --git a/docs/service/robot.md b/docs/service/robot.md index 96ca120..29781fc 100644 --- a/docs/service/robot.md +++ b/docs/service/robot.md @@ -51,7 +51,7 @@ Research Object Builder for Open Toxicology. ## VHP4Safety Service Metadata -* Stage: +* Stage: Other * Sub-Stage: diff --git a/docs/service/sombie.md b/docs/service/sombie.md index 7fd11c4..f4c02b4 100644 --- a/docs/service/sombie.md +++ b/docs/service/sombie.md @@ -51,7 +51,7 @@ A webservice for prediction of protein-structure and reactivity based (P450) sit ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000056 +* Stage: https://vhp4safety.github.io/glossary#VHP0000155 * Sub-Stage: diff --git a/docs/service/sysrev.md b/docs/service/sysrev.md index 9078d28..ac5576c 100644 --- a/docs/service/sysrev.md +++ b/docs/service/sysrev.md @@ -50,7 +50,7 @@ An online service for conduction of literature review, data extraction and syste ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000053 diff --git a/docs/service/toxtemp_assistant.md b/docs/service/toxtemp_assistant.md index 31f25a4..5c54103 100644 --- a/docs/service/toxtemp_assistant.md +++ b/docs/service/toxtemp_assistant.md @@ -53,7 +53,7 @@ An online tool for harmonizing in vitro toxicity test methods using Large Langua ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: Other * Sub-Stage: diff --git a/docs/service/txg_mapr.md b/docs/service/txg_mapr.md index 3b83ad5..d6b43ee 100644 --- a/docs/service/txg_mapr.md +++ b/docs/service/txg_mapr.md @@ -52,7 +52,7 @@ An online application for implementation of weighted gene co-expression network ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000018 diff --git a/docs/service/wikibase.md b/docs/service/wikibase.md index deba351..e5fea46 100644 --- a/docs/service/wikibase.md +++ b/docs/service/wikibase.md @@ -52,7 +52,7 @@ A Wikibase instance for storing and presenting information about toxic, safe and ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000149 +* Stage: Other * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/wikipathways_aop.md b/docs/service/wikipathways_aop.md index 4b0dc7b..5c4ec36 100644 --- a/docs/service/wikipathways_aop.md +++ b/docs/service/wikipathways_aop.md @@ -52,7 +52,7 @@ An Adverse Outcome Pathway (AOP) portal on WikiPathways for exploring the molecu ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/xploreaop.md b/docs/service/xploreaop.md index 047013c..5982086 100644 --- a/docs/service/xploreaop.md +++ b/docs/service/xploreaop.md @@ -52,7 +52,7 @@ A web application for visualization of Adverse Outcome Pathway (AOP) networks an ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000102 +* Stage: https://vhp4safety.github.io/glossary#VHP0000156 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 4696651..c84999b 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -4,7 +4,7 @@ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.sitemaps.org/schemas/sitemap/0.9 http://www.sitemaps.org/schemas/sitemap/0.9/sitemap.xsd"> - + From f9609c5b3ab5195ddfd0cbc3da05374e3cd0dc5d Mon Sep 17 00:00:00 2001 From: marvinm2 Date: Fri, 17 Apr 2026 15:07:33 +0200 Subject: [PATCH 4/4] Revert "Updated service Markdown" This reverts commit 141dda0ad8b7c9ed711eb442c88f7a1070235d56. --- docs/service/aop-builder.md | 2 +- docs/service/aopsuite.md | 2 +- docs/service/aopwiki.md | 2 +- docs/service/aopwikiapi.md | 2 +- docs/service/arrayanalysis.md | 2 +- docs/service/asreview.md | 2 +- docs/service/biomodels.md | 2 +- docs/service/biotransformer.md | 2 +- docs/service/bmdexpress_3.md | 2 +- docs/service/bridgedb.md | 2 +- docs/service/cdk.md | 4 ++-- docs/service/cdkdepict.md | 2 +- docs/service/celldesigner.md | 2 +- docs/service/comptox.md | 2 +- docs/service/copasi.md | 4 ++-- docs/service/cplogd.md | 2 +- docs/service/danish_qsar_database.md | 2 +- docs/service/decimer.md | 2 +- docs/service/dsld.md | 2 +- docs/service/ema_documents.md | 2 +- docs/service/endocrine_disruptome.md | 2 +- docs/service/fairdomhub.md | 2 +- docs/service/fairspace.md | 2 +- docs/service/farmacokompas.md | 2 +- docs/service/flame.md | 2 +- docs/service/google.md | 2 +- docs/service/gscholar.md | 2 +- docs/service/jrc_data_catalogue.md | 2 +- docs/service/llemy.md | 2 +- docs/service/mct8-dock.md | 2 +- docs/service/molaopanalyser.md | 2 +- docs/service/molaopbuilder.md | 2 +- docs/service/oecd_qsar_toolbox.md | 2 +- docs/service/ontox_physiological_maps.md | 4 ++-- docs/service/oppbk_model.md | 2 +- docs/service/opsin.md | 2 +- docs/service/oqt_assistant.md | 2 +- docs/service/pathvisio.md | 4 ++-- docs/service/qaop_app.md | 2 +- docs/service/qsprpred.md | 2 +- docs/service/r_odaf.md | 2 +- docs/service/robot.md | 2 +- docs/service/sombie.md | 2 +- docs/service/sysrev.md | 2 +- docs/service/toxtemp_assistant.md | 2 +- docs/service/txg_mapr.md | 2 +- docs/service/wikibase.md | 2 +- docs/service/wikipathways_aop.md | 2 +- docs/service/xploreaop.md | 2 +- docs/sitemap.xml | 2 +- 50 files changed, 54 insertions(+), 54 deletions(-) diff --git a/docs/service/aop-builder.md b/docs/service/aop-builder.md index a58e526..0bb0291 100644 --- a/docs/service/aop-builder.md +++ b/docs/service/aop-builder.md @@ -51,7 +51,7 @@ A tool that supports Adverse Outcome Pathway (AOP) development by extracting key ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/aopsuite.md b/docs/service/aopsuite.md index 229db94..ca5c0d1 100644 --- a/docs/service/aopsuite.md +++ b/docs/service/aopsuite.md @@ -52,7 +52,7 @@ A web-based tool for building, visualizing and analyzing Adverse Outcome Pathway ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/aopwiki.md b/docs/service/aopwiki.md index bdbd8f7..1ed0423 100644 --- a/docs/service/aopwiki.md +++ b/docs/service/aopwiki.md @@ -53,7 +53,7 @@ A graphical interface for creating, preloading and exporting SPARQL queries tail ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/aopwikiapi.md b/docs/service/aopwikiapi.md index 90c3a58..3f5de5a 100644 --- a/docs/service/aopwikiapi.md +++ b/docs/service/aopwikiapi.md @@ -53,7 +53,7 @@ A REST API for creating and accessing content in the AOP-Wiki database. ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/arrayanalysis.md b/docs/service/arrayanalysis.md index ae7e3c4..35aa66b 100644 --- a/docs/service/arrayanalysis.md +++ b/docs/service/arrayanalysis.md @@ -53,7 +53,7 @@ A user-interface for preprocessing and statistically analyzing RNA-sequencing an ## VHP4Safety Service Metadata -* Stage: Other +* Stage: NA * Sub-Stage: NA diff --git a/docs/service/asreview.md b/docs/service/asreview.md index 1178aba..89147a6 100644 --- a/docs/service/asreview.md +++ b/docs/service/asreview.md @@ -50,7 +50,7 @@ Open-source active-learning software for transparent and efficient systematic li ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000053 diff --git a/docs/service/biomodels.md b/docs/service/biomodels.md index 764ced7..ccd8ded 100644 --- a/docs/service/biomodels.md +++ b/docs/service/biomodels.md @@ -52,7 +52,7 @@ A repository dedicated to the inventory and acquisition of high-quality mathemat ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000055 diff --git a/docs/service/biotransformer.md b/docs/service/biotransformer.md index 07194a6..9cf1260 100644 --- a/docs/service/biotransformer.md +++ b/docs/service/biotransformer.md @@ -51,7 +51,7 @@ A software tool for predicting metabolites from SMILES-formatted chemical inputs ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000155 +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/bmdexpress_3.md b/docs/service/bmdexpress_3.md index cefb781..6c901f0 100644 --- a/docs/service/bmdexpress_3.md +++ b/docs/service/bmdexpress_3.md @@ -51,7 +51,7 @@ A software tool for high-dimensional dose-response modeling and analysis. ## VHP4Safety Service Metadata -* Stage: Other +* Stage: * Sub-Stage: diff --git a/docs/service/bridgedb.md b/docs/service/bridgedb.md index 974357d..937a493 100644 --- a/docs/service/bridgedb.md +++ b/docs/service/bridgedb.md @@ -53,7 +53,7 @@ A framework for mapping identifiers across biological databases and related sour ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000047 diff --git a/docs/service/cdk.md b/docs/service/cdk.md index 201da14..6887261 100644 --- a/docs/service/cdk.md +++ b/docs/service/cdk.md @@ -50,9 +50,9 @@ A Java library for chem- and bioinformatics, with functionality to read/write ch ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: Not available -* Sub-Stage: +* Sub-Stage: Not available * Development Cloud: Not available diff --git a/docs/service/cdkdepict.md b/docs/service/cdkdepict.md index 5b8c2ed..6e82b7a 100644 --- a/docs/service/cdkdepict.md +++ b/docs/service/cdkdepict.md @@ -53,7 +53,7 @@ A webservice for generating chemical structure images from SMILES inputs. ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/celldesigner.md b/docs/service/celldesigner.md index a47fb1d..b76d1cd 100644 --- a/docs/service/celldesigner.md +++ b/docs/service/celldesigner.md @@ -52,7 +52,7 @@ An intuitive user interface for creating gene-regulatory and biochemical network ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: diff --git a/docs/service/comptox.md b/docs/service/comptox.md index 8ea34e9..ffe374f 100644 --- a/docs/service/comptox.md +++ b/docs/service/comptox.md @@ -52,7 +52,7 @@ An online database for searching chemical, toxicity and exposure information. ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000148 * Sub-Stage: diff --git a/docs/service/copasi.md b/docs/service/copasi.md index f211ae7..18a1242 100644 --- a/docs/service/copasi.md +++ b/docs/service/copasi.md @@ -51,9 +51,9 @@ An open-source software for simulating, analyzing and visualizing biochemical ne ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: Not available -* Sub-Stage: +* Sub-Stage: Not available * Development Cloud: Not available diff --git a/docs/service/cplogd.md b/docs/service/cplogd.md index 9dbc669..72c2330 100644 --- a/docs/service/cplogd.md +++ b/docs/service/cplogd.md @@ -52,7 +52,7 @@ An online model for predicting water-octanol distribution coefficient (logD) of ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/danish_qsar_database.md b/docs/service/danish_qsar_database.md index 974343a..f40be03 100644 --- a/docs/service/danish_qsar_database.md +++ b/docs/service/danish_qsar_database.md @@ -51,7 +51,7 @@ A freely available (Q)SAR tool for substance evaluations that includes estimates ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: * Sub-Stage: diff --git a/docs/service/decimer.md b/docs/service/decimer.md index b1134ed..151cb8a 100644 --- a/docs/service/decimer.md +++ b/docs/service/decimer.md @@ -52,7 +52,7 @@ An online service for automatically extracting chemical structure depictiions fr ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/dsld.md b/docs/service/dsld.md index 5c53899..26b5d87 100644 --- a/docs/service/dsld.md +++ b/docs/service/dsld.md @@ -51,7 +51,7 @@ An online database from the NIH Office of Dietary Supplements that lets you expl ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000154 +* Stage: external exposure * Sub-Stage: compound characteristics diff --git a/docs/service/ema_documents.md b/docs/service/ema_documents.md index 2de7905..c4e8adb 100644 --- a/docs/service/ema_documents.md +++ b/docs/service/ema_documents.md @@ -52,7 +52,7 @@ An online repository for inventarisation of official reports from the European M ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000154 +* Stage: external exposure * Sub-Stage: compound characteristics diff --git a/docs/service/endocrine_disruptome.md b/docs/service/endocrine_disruptome.md index 52c338b..f9b79b0 100644 --- a/docs/service/endocrine_disruptome.md +++ b/docs/service/endocrine_disruptome.md @@ -51,7 +51,7 @@ An open source, user friendly and web based prediction tool that uses molecular ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: * Sub-Stage: diff --git a/docs/service/fairdomhub.md b/docs/service/fairdomhub.md index c8e0292..767fce8 100644 --- a/docs/service/fairdomhub.md +++ b/docs/service/fairdomhub.md @@ -52,7 +52,7 @@ A web-accessible registry for managing, sharing and organising research data and ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: diff --git a/docs/service/fairspace.md b/docs/service/fairspace.md index b25455e..73e6bf6 100644 --- a/docs/service/fairspace.md +++ b/docs/service/fairspace.md @@ -52,7 +52,7 @@ An open source RDF-based data management platform for importing and exporting re ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000049 diff --git a/docs/service/farmacokompas.md b/docs/service/farmacokompas.md index 0cd33d9..3b3f779 100644 --- a/docs/service/farmacokompas.md +++ b/docs/service/farmacokompas.md @@ -52,7 +52,7 @@ A Dutch online resource for gathering data on the pharmacology, adverse effects, ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: external exposure * Sub-Stage: compound characteristics diff --git a/docs/service/flame.md b/docs/service/flame.md index fc03ef0..297e294 100644 --- a/docs/service/flame.md +++ b/docs/service/flame.md @@ -51,7 +51,7 @@ An open source web application for building predictive models from biologically ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: diff --git a/docs/service/google.md b/docs/service/google.md index 41bf811..8ac99bf 100644 --- a/docs/service/google.md +++ b/docs/service/google.md @@ -51,7 +51,7 @@ Online search engine for Google. ## VHP4Safety Service Metadata -* Stage: Other +* Stage: generic * Sub-Stage: mechanisms of toxicity / compound characteristics diff --git a/docs/service/gscholar.md b/docs/service/gscholar.md index e06cee5..ca0d584 100644 --- a/docs/service/gscholar.md +++ b/docs/service/gscholar.md @@ -51,7 +51,7 @@ An online search engine for (scientific) literature. ## VHP4Safety Service Metadata -* Stage: Other +* Stage: generic * Sub-Stage: mechanisms of toxicity / compound characteristics diff --git a/docs/service/jrc_data_catalogue.md b/docs/service/jrc_data_catalogue.md index 9d22a2c..b14bb8d 100644 --- a/docs/service/jrc_data_catalogue.md +++ b/docs/service/jrc_data_catalogue.md @@ -52,7 +52,7 @@ An in-house data inventory produced by the Joint Research Centre (JRC) for provi ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000049 diff --git a/docs/service/llemy.md b/docs/service/llemy.md index 66b0131..d6c78c9 100644 --- a/docs/service/llemy.md +++ b/docs/service/llemy.md @@ -51,7 +51,7 @@ An online tool for answering questions about lipid metabolism and related toxico ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: prototype diff --git a/docs/service/mct8-dock.md b/docs/service/mct8-dock.md index 2de0e58..f7c642b 100644 --- a/docs/service/mct8-dock.md +++ b/docs/service/mct8-dock.md @@ -51,7 +51,7 @@ A Python-based notebook for identifying potential MCT8 inhibitors and related mo ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: * Sub-Stage: diff --git a/docs/service/molaopanalyser.md b/docs/service/molaopanalyser.md index f9db80e..8a4be53 100644 --- a/docs/service/molaopanalyser.md +++ b/docs/service/molaopanalyser.md @@ -52,7 +52,7 @@ An online service for analyzing transcriptomic data in the context of molecular ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: * Sub-Stage: diff --git a/docs/service/molaopbuilder.md b/docs/service/molaopbuilder.md index 0dfaa66..18378d6 100644 --- a/docs/service/molaopbuilder.md +++ b/docs/service/molaopbuilder.md @@ -53,7 +53,7 @@ A web application for mapping Key Events from Adverse Outcome Pathways to WikiPa ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: * Sub-Stage: diff --git a/docs/service/oecd_qsar_toolbox.md b/docs/service/oecd_qsar_toolbox.md index 0a74125..516ae8d 100644 --- a/docs/service/oecd_qsar_toolbox.md +++ b/docs/service/oecd_qsar_toolbox.md @@ -52,7 +52,7 @@ A software for supporting chemical hazard assessment and enhancing mechanistic k ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000056 * Sub-Stage: diff --git a/docs/service/ontox_physiological_maps.md b/docs/service/ontox_physiological_maps.md index 56cb544..8360e68 100644 --- a/docs/service/ontox_physiological_maps.md +++ b/docs/service/ontox_physiological_maps.md @@ -51,9 +51,9 @@ Maps for illustrating biological processes behind toxicological risks using a st ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: Not available -* Sub-Stage: +* Sub-Stage: Not available * Development Cloud: Not available diff --git a/docs/service/oppbk_model.md b/docs/service/oppbk_model.md index e8cc0c2..2231458 100644 --- a/docs/service/oppbk_model.md +++ b/docs/service/oppbk_model.md @@ -52,7 +52,7 @@ An online physiologically based pharmacokinetic model for organophosphates ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000155 +* Stage: https://vhp4safety.github.io/glossary#VHP0000056 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000061 diff --git a/docs/service/opsin.md b/docs/service/opsin.md index 2dcc7e5..d3aa729 100644 --- a/docs/service/opsin.md +++ b/docs/service/opsin.md @@ -51,7 +51,7 @@ An online service for parsing chemical IUPAC names into a machine-readable chemi ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000148 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000149 diff --git a/docs/service/oqt_assistant.md b/docs/service/oqt_assistant.md index fd70769..61606fc 100644 --- a/docs/service/oqt_assistant.md +++ b/docs/service/oqt_assistant.md @@ -53,7 +53,7 @@ An online assistant for using the OECD QSAR Toolbox to analyze chemicals, assess ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: prototype diff --git a/docs/service/pathvisio.md b/docs/service/pathvisio.md index b1a7f93..396aa33 100644 --- a/docs/service/pathvisio.md +++ b/docs/service/pathvisio.md @@ -52,9 +52,9 @@ Desktop software to visualize, edit, and draw new pathways, which can be exporte ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: Not available -* Sub-Stage: +* Sub-Stage: Not available * Development Cloud: Not available diff --git a/docs/service/qaop_app.md b/docs/service/qaop_app.md index 2bb81ae..97eab42 100644 --- a/docs/service/qaop_app.md +++ b/docs/service/qaop_app.md @@ -52,7 +52,7 @@ An interactive tool for visualizing and predicting key events (KEs) and adverse ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/qsprpred.md b/docs/service/qsprpred.md index 17fa495..b3afd8c 100644 --- a/docs/service/qsprpred.md +++ b/docs/service/qsprpred.md @@ -53,7 +53,7 @@ An online tool for chemical activity prediction for various endpoints using targ ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000153 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: diff --git a/docs/service/r_odaf.md b/docs/service/r_odaf.md index ce6839c..b9367da 100644 --- a/docs/service/r_odaf.md +++ b/docs/service/r_odaf.md @@ -52,7 +52,7 @@ An R Shiny interface for the R-ODAF framework that provides standardised RNA-seq ## VHP4Safety Service Metadata -* Stage: Other +* Stage: Toxicodynamics/AOP * Sub-Stage: Transcriptomics / Differential Expression diff --git a/docs/service/robot.md b/docs/service/robot.md index 29781fc..96ca120 100644 --- a/docs/service/robot.md +++ b/docs/service/robot.md @@ -51,7 +51,7 @@ Research Object Builder for Open Toxicology. ## VHP4Safety Service Metadata -* Stage: Other +* Stage: * Sub-Stage: diff --git a/docs/service/sombie.md b/docs/service/sombie.md index f4c02b4..7fd11c4 100644 --- a/docs/service/sombie.md +++ b/docs/service/sombie.md @@ -51,7 +51,7 @@ A webservice for prediction of protein-structure and reactivity based (P450) sit ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000155 +* Stage: https://vhp4safety.github.io/glossary#VHP0000056 * Sub-Stage: diff --git a/docs/service/sysrev.md b/docs/service/sysrev.md index ac5576c..9078d28 100644 --- a/docs/service/sysrev.md +++ b/docs/service/sysrev.md @@ -50,7 +50,7 @@ An online service for conduction of literature review, data extraction and syste ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000053 diff --git a/docs/service/toxtemp_assistant.md b/docs/service/toxtemp_assistant.md index 5c54103..31f25a4 100644 --- a/docs/service/toxtemp_assistant.md +++ b/docs/service/toxtemp_assistant.md @@ -53,7 +53,7 @@ An online tool for harmonizing in vitro toxicity test methods using Large Langua ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: diff --git a/docs/service/txg_mapr.md b/docs/service/txg_mapr.md index d6b43ee..3b83ad5 100644 --- a/docs/service/txg_mapr.md +++ b/docs/service/txg_mapr.md @@ -52,7 +52,7 @@ An online application for implementation of weighted gene co-expression network ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000018 diff --git a/docs/service/wikibase.md b/docs/service/wikibase.md index e5fea46..deba351 100644 --- a/docs/service/wikibase.md +++ b/docs/service/wikibase.md @@ -52,7 +52,7 @@ A Wikibase instance for storing and presenting information about toxic, safe and ## VHP4Safety Service Metadata -* Stage: Other +* Stage: https://vhp4safety.github.io/glossary#VHP0000149 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000148 diff --git a/docs/service/wikipathways_aop.md b/docs/service/wikipathways_aop.md index 5c4ec36..4b0dc7b 100644 --- a/docs/service/wikipathways_aop.md +++ b/docs/service/wikipathways_aop.md @@ -52,7 +52,7 @@ An Adverse Outcome Pathway (AOP) portal on WikiPathways for exploring the molecu ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/service/xploreaop.md b/docs/service/xploreaop.md index 5982086..047013c 100644 --- a/docs/service/xploreaop.md +++ b/docs/service/xploreaop.md @@ -52,7 +52,7 @@ A web application for visualization of Adverse Outcome Pathway (AOP) networks an ## VHP4Safety Service Metadata -* Stage: https://vhp4safety.github.io/glossary#VHP0000156 +* Stage: https://vhp4safety.github.io/glossary#VHP0000102 * Sub-Stage: https://vhp4safety.github.io/glossary#VHP0000023 diff --git a/docs/sitemap.xml b/docs/sitemap.xml index c84999b..4696651 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -4,7 +4,7 @@ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.sitemaps.org/schemas/sitemap/0.9 http://www.sitemaps.org/schemas/sitemap/0.9/sitemap.xsd"> - +