-
Notifications
You must be signed in to change notification settings - Fork 50
Open
Description
- Selecting the
normalization = 'quantile'parameter in the dataProcess() will report an error like below, and there is no error if use the default parametersnormalization = 'equalizeMedians'.
Data can be downloaded from here.
> DDA2009.proposed <- MSstats::dataProcess(raw = fileData1,
+ normalization = 'quantile',
+ summaryMethod = 'TMP',
+ censoredInt = "NA",
+ MBimpute = TRUE)
INFO [2022-03-08 10:48:00] ** Multiple fractionations exist: 2 fractionations per MS replicate.
INFO [2022-03-08 10:48:57] ** Features with one or two measurements across runs are removed.
INFO [2022-03-08 10:48:57] ** Fractionation handled.
INFO [2022-03-08 10:48:57] ** Updated quantification data to make balanced design. Missing values are marked by NA
Error in dcast.data.table(input[nonmissing_filter & label_filter & (RUN %in% :
Can not cast an empty data.table
- Using the dataProces() (default parameter) will report an error that never occurred, and I want to know what caused it so I can write it in my condition judgment statement. Error message is as follows:
Data can be downloaded from here.
Error in .handleFractionsLF(input) :
** It is hard to find the same fractionation across sample, due to lots of overlapped features between fractionations. Please add Fraction column in input.
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels