Converter for PaSER (DIA) matrix to MSstatsPTM ?

[JieXue22]

Dear MSstatsPTM developers,

I have a peptides matrix generated from PaSER. It's a tsv. file and the PTMs are represented with UniMod Accession #. Could you please add a converter for this platform?? The header format is below:

Protein.Group	Protein.Ids	Protein.Names	Genes	First.Protein.Description	Proteotypic	Stripped.Sequence	Modified.Sequence	Precursor.Charge	Precursor.Id	sample 1	sample 2	sample 3	sample 4	sample 5	sample 6	sample 7	sample 8	sample 9	sample 10
P55011	P55011	S12A2_HUMAN	SLC12A2	Solute carrier family 12 member 2	1	AAAAAAAAAAAAAAAGAGAGAK	AAAAAAAAAAAAAAAGAGAGAK	2	AAAAAAAAAAAAAAAGAGAGAK2	intensity	intensity	intensity	intensity	intensity	intensity	intensity	intensity	intensity	intensity

Thank you!

[devonjkohler]

Hi @JieXue22,

I have never seen the output of PaSER. Could you shoot me over some data for this? I can look into the converter if I have the data.

Devon