diff --git a/data/maxq_lf_annotation.rda b/data/maxq_lf_annotation.rda index f7b977e..ef82929 100644 Binary files a/data/maxq_lf_annotation.rda and b/data/maxq_lf_annotation.rda differ diff --git a/data/maxq_lf_evidence.rda b/data/maxq_lf_evidence.rda index 1c2497d..89795db 100644 Binary files a/data/maxq_lf_evidence.rda and b/data/maxq_lf_evidence.rda differ diff --git a/inst/tinytest/test_converters.R b/inst/tinytest/test_converters.R index 52d9089..d30af05 100644 --- a/inst/tinytest/test_converters.R +++ b/inst/tinytest/test_converters.R @@ -146,9 +146,9 @@ mq_imported = MaxQtoMSstatsPTMFormat(evidence=maxq_lf_evidence, labeling_type = "LF", which_proteinid_ptm = "Proteins") .validatePositiveNumberOfRows(mq_imported) -.validateProteinId(mq_imported$PROTEIN, "P36578", 144) -.validateProteinId(mq_imported$PTM, "P36578_S295", 72) -.validateProteinId(mq_imported$PTM, "Q13523_S431_S437", 36) +.validateProteinId(mq_imported$PROTEIN, "P36578", 132) +.validateProteinId(mq_imported$PTM, "P36578_S295", 66) +.validateProteinId(mq_imported$PTM, "Q13523_S431_S437", 33) .validatePtmSubstring( mq_imported$PTM, "Phospho \\(STY\\)", length(mq_imported$PTM$PeptideSequence))