SweeD: No such file or directory

[diegohernansanchez]

Hi,
I work on a Ubuntu 16 server, and I intalled SweeD as suggested:
$ git clone https://github.com/alachins/sweed.git
$ make -f Makefile.gcc
( I was actually interested in Makefile.PTHREADS but didnt work)

The binary was generated all right, but when I try to run SweeD I get:
$ ./PATH/SweeD -name test -input file.vcf -grid 5
-bash: ./PATH/SweeD: No such file or directory

The file is certainly there:
$ file PATH/SweeD
PATH/SweeD: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked,
interpreter /lib64/ld-linux-x86-64.so.2,for GNU/Linux 2.6.32, BuildID[sha1]=eebc83d03036d6f62f5906d0fee91ac4f76d1a0c, not stripped

I thought may be some library was missing:
$ objdump -p SweeD | grep NEEDED
NEEDED libm.so.6
NEEDED libc.so.6

But both of these libraries seems present in the system:
$ ldconfig -p | grep libm.so.6
libm.so.6 (libc6,x86-64, OS ABI: Linux 2.6.32) => /lib/x86_64-linux-gnu/libm.so.6
$ ldconfig -p | grep libc.so.6
libc.so.6 (libc6,x86-64, OS ABI: Linux 2.6.32) => /lib/x86_64-linux-gnu/libc.so.6

Im no expert in linux (all this comes from threads). Any suggestion or thoughts how to make it work? Thanks a bunch
d!!!

[alachins]

Hi Diego, I am not sure what might be going wrong here but make sure you are providing the right path. This: ./PATH/SweeD and PATH/SweeD are different when you are not in the right directory. If you provide the full path you could try ~/PATH/SweeD! Let me know if this works! Best regards, Nikos A.

…

On Sun, Apr 17, 2022 at 3:21 AM diegohernansanchez ***@***.***> wrote: Hi, I work on a Ubuntu 16 server, and I intalled SweeD as suggested: $ git clone https://github.com/alachins/sweed.git $ make -f Makefile.gcc ( I was actually interested in Makefile.PTHREADS but didnt work) The binary was generated all right, but when I try to run SweeD I get: $ ./PATH/SweeD -name test -input file.vcf -grid 5 -bash: ./PATH/SweeD: No such file or directory The file is certainly there: $ file PATH/SweeD PATH/SweeD: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked, interpreter /lib64/ld-linux-x86-64.so.2,for GNU/Linux 2.6.32, BuildID[sha1]=eebc83d03036d6f62f5906d0fee91ac4f76d1a0c, not stripped I thought may be some library was missing: $ objdump -p SweeD | grep NEEDED NEEDED libm.so.6 NEEDED libc.so.6 But both of these libraries seems present in the system: $ ldconfig -p | grep libm.so.6 libm.so.6 (libc6,x86-64, OS ABI: Linux 2.6.32) => /lib/x86_64-linux-gnu/libm.so.6 $ ldconfig -p | grep libc.so.6 libc.so.6 (libc6,x86-64, OS ABI: Linux 2.6.32) => /lib/x86_64-linux-gnu/libc.so.6 Im no expert in linux (all this comes from threads). Any suggestion or thoughts how to make it work? Thanks a bunch d!!! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

-- Nikolaos Alachiotis