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Exception: No submit queue specified #1

@jdm204

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@jdm204

Hi, thanks for the tool.

I encountered
Traceback (most recent call last): File "/home/jamie/software/miniconda3/envs/destruct/bin/destruct", line 11, in <module> load_entry_point('destruct==0.4.9', 'console_scripts', 'destruct')() File "/home/jamie/software/miniconda3/envs/destruct/lib/python2.7/site-packages/destruct-0.4.9-py2.7.egg/destruct/ui/main.py", line 16, in main File "/home/jamie/software/miniconda3/envs/destruct/lib/python2.7/site-packages/destruct-0.4.9-py2.7.egg/destruct/ui/run.py", line 19, in run File "/home/jamie/software/miniconda3/envs/destruct/lib/python2.7/site-packages/pypeliner/app.py", line 216, in __init__ config_filename=self.config['submit_config']) File "/home/jamie/software/miniconda3/envs/destruct/lib/python2.7/site-packages/pypeliner/execqueue/factory.py", line 6, in create raise Exception('No submit queue specified') Exception: No submit queue specified
while running through the guide. This is the exact command I ran:
destruct run $ref_data_dir breakpoint_table breakpoint_library_table breakpoint_read_table --bam_files $tumour_bam $normal_bam --lib_ids tumour normal

I see that [--submit] is listed under usage but I'm unsure how to use it since it isn't set in the example.

Cheers!

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