Having issue installing #1
Description
Looking to use the wrapper trim_fastq for R. Trying to install the package on Windows.
> remotes::install_github("anilchalisey/rseqR", force=TRUE)
I get the error:
Downloading GitHub repo anilchalisey/rseqR@master
....
Error in parse(outFile) :
C:/Users/.../AppData/Local/Temp/Rtmp270b2M/R.INSTALL56286f931d24/rseqR/R/pathway_analysis.R:76:12: unexpected '{'
75: # if plotting then do so here - we plot the top 3 upregulated and downregulated
76: if (plot {
^
ERROR: unable to collate and parse R files for package 'rseqR'
* removing 'D:/R_library/rseqR'
* restoring previous 'D:/R_library/rseqR'
Error: Failed to install 'rseqR' from GitHub:
(converted from warning) installation of package ‘C:/Users/.../AppData/Local/Temp/RtmpQ37IIz/file59983ea65739/rseqR_0.0.1.1.tar.gz’ had non-zero exit status
Tried to manually unpack the package and delete the pathway_analysis file, but that didn't work either.
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] remotes_2.1.1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.4.6 rstudioapi_0.11 magrittr_1.5 usethis_1.5.1 devtools_2.2.1 pkgload_1.0.2 R6_2.4.1 rlang_0.4.5 fansi_0.4.1
[10] tools_3.6.0 pkgbuild_1.0.6 sessioninfo_1.1.1 cli_2.0.2 withr_2.1.2 ellipsis_0.3.0 assertthat_0.2.1 digest_0.6.25 rprojroot_1.3-2
[19] crayon_1.3.4 processx_3.4.2 callr_3.4.3 fs_1.3.1 ps_1.3.2 curl_4.3 testthat_2.3.2 memoise_1.1.0 glue_1.4.0
[28] compiler_3.6.0 desc_1.2.0 backports_1.1.6 prettyunits_1.1.1