unable to collate and parse R files for package 'rseqR'

[Re2012r]

Installing package into ‘C:/Users/lenovo/Documents/R/win-library/4.1’
(as ‘lib’ is unspecified)

• installing source package 'rseqR' ...
  ** using staged installation
  ** R
  Error in parse(outFile) :
  C:/Users/lenovo/AppData/Local/Temp/RtmpoZKe7j/R.INSTALL16a82a32d7b/rseqR/R/pathway_analysis.R:76:12: unexpected '{'
  75: # if plotting then do so here - we plot the top 3 upregulated and downregulated
  76: if (plot {
  ^
  ERROR: unable to collate and parse R files for package 'rseqR'
• removing 'C:/Users/lenovo/Documents/R/win-library/4.1/rseqR'
  Warning message:
  In i.p(...) :
  installation of package ‘C:/Users/lenovo/AppData/Local/Temp/RtmpuGeCbG/file15141fe19eb/rseqR_0.0.1.1.tar.gz’ had non-zero exit status

[ihsxa20]

hey, did you find a solution to this

[jake-bioinfo]

hey, did you find a solution to this

A solution to this, is to clone the repo, then add the missing parentheses, ie. line 75 should be

if (plot) {

Then in Rstudio:

devtools::install('dir/you/cloned/to')

Worked for me, hope this helps.

[wwy211]

Hi,
which file is this missing parenthesis in?

[jake-bioinfo]

Hi,
which file is this missing parenthesis in?

Hello,
https://github.com/anilchalisey/rseqR/tree/master/R/pathway_analysis.R
On line 76, now

rseqR/R/pathway_analysis.R

Line 76 in 6bec4ec

if (plot {