I am currently trying to model a G-protein coupled receptor from its FASTA sequence using the pre-trained CASP12 model and am running into an issue. The command I'm running is:
rgn/model/protling.py RGN12/runs/CASP12/ProteinNet12Thinning90/configuration -d RGN12 -p -e weighted_testing -g 0
And the error I'm getting is this:
Traceback (most recent call last):
File "rgn/model/protling.py", line 527, in
while loop(args): pass
File "rgn/model/protling.py", line 290, in loop
raise RuntimeError('Chosen validation reference is not included in run.')
RuntimeError: Chosen validation reference is not included in run.
I believe I have everything in the correct directories, with my .tfrecord in the "..RGN12/data/ProteinNet12Thinning90/testing/" folder. What exactly is the validation reference it is asking for, and how do I denote it if I need it to generate my model?
In addition, I've tried dropping the -p argument by running "rgn/model/protling.py RGN12/runs/CASP12/ProteinNet12Thinning90/configuration -d RGN12 -e weighted_testing -g 0" but it just outputs the validation reference error in a separate log file, the one in the "RGN12/logs/" folder rather than in the "-p" folder.
I am currently trying to model a G-protein coupled receptor from its FASTA sequence using the pre-trained CASP12 model and am running into an issue. The command I'm running is:
rgn/model/protling.py RGN12/runs/CASP12/ProteinNet12Thinning90/configuration -d RGN12 -p -e weighted_testing -g 0
And the error I'm getting is this:
Traceback (most recent call last):
File "rgn/model/protling.py", line 527, in
while loop(args): pass
File "rgn/model/protling.py", line 290, in loop
raise RuntimeError('Chosen validation reference is not included in run.')
RuntimeError: Chosen validation reference is not included in run.
I believe I have everything in the correct directories, with my .tfrecord in the "..RGN12/data/ProteinNet12Thinning90/testing/" folder. What exactly is the validation reference it is asking for, and how do I denote it if I need it to generate my model?
In addition, I've tried dropping the -p argument by running "rgn/model/protling.py RGN12/runs/CASP12/ProteinNet12Thinning90/configuration -d RGN12 -e weighted_testing -g 0" but it just outputs the validation reference error in a separate log file, the one in the "RGN12/logs/" folder rather than in the "-p" folder.