Skip to content

NaN values #4

@snashraf

Description

@snashraf

Hi team,

I was able to run the charr using hail version.

charr_result = hl.compute_charr(mt, ref_AF=(1 - mt.info.AF[0]))
charr_result.export("charr_result.tsv")
print (charr_result)

I am getting values as NaN for most of sample ? How do we interpret this ? Do you have some suggestion for CHAR score to consider as contaminated ?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions