diff --git a/gwaspy/pca/pca_joint.py b/gwaspy/pca/pca_joint.py index 9940fae..9051a32 100644 --- a/gwaspy/pca/pca_joint.py +++ b/gwaspy/pca/pca_joint.py @@ -7,8 +7,8 @@ def joint_pca( - ref_dirname: str = 'gs://hgdp-1kg/hgdp_tgp/datasets_for_others/lindo/ds_without_outliers/', - ref_basename: str = 'unrelated', + ref_dirname: str = 'gs://gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/pca_results/', + ref_basename: str = 'unrelateds_without_outliers', in_mt: hl.MatrixTable = None, data_basename: str = None, npcs: int = 20,