From 66b0112766671a6b7839a50041d94157903e2f7e Mon Sep 17 00:00:00 2001 From: Zan Koenig Date: Thu, 20 Mar 2025 11:23:34 -0400 Subject: [PATCH] updated ref in joint pca to public access path for HGDP+1kGP --- gwaspy/pca/pca_joint.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gwaspy/pca/pca_joint.py b/gwaspy/pca/pca_joint.py index 9940fae..9051a32 100644 --- a/gwaspy/pca/pca_joint.py +++ b/gwaspy/pca/pca_joint.py @@ -7,8 +7,8 @@ def joint_pca( - ref_dirname: str = 'gs://hgdp-1kg/hgdp_tgp/datasets_for_others/lindo/ds_without_outliers/', - ref_basename: str = 'unrelated', + ref_dirname: str = 'gs://gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/pca_results/', + ref_basename: str = 'unrelateds_without_outliers', in_mt: hl.MatrixTable = None, data_basename: str = None, npcs: int = 20,