circularization error #23
Description
Hi @elimoss
After 11 days of assembly, process stopped while circularization of genomes.
error:
Activating singularity image /lustre/rsharma/.snakemake/singularity/f075a3ce7bc1893be5302161e5e7807a.simg
Waiting at most 30 seconds for missing files.
MissingOutputException in line 574 of /home/rsharma/lathe/Snakefile:
Job Missing files after 30 seconds:
W1/3.circularization/1.candidate_genomes
This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait.
Job id: 25 completed successfully, but some output files are missing. 25
Job failed, going on with independent jobs.
Exiting because a job execution failed. Look above for error message
Complete log: /lustre/rsharma/.snakemake/log/2021-08-12T150046.064606.snakemake.log
{'W1': ['/home/rsharma/WWK_forward_paired.fastq', '/home/rsharma/WWK_reverse_paired.fastq']}
Checking for updates or modifications to workflow
WARNING: Differences to latest version detected. Please reset changes and/or pull repo.
Please help me figure out what is the problem.
Thanks
Saraswati