Skip to content

Failed to pull singularity image #27

@DCossey

Description

@DCossey

Hello, I have just installed singularity along with all the dependencies. However, when I run the following command, I get the error below:

sudo snakemake --use-singularity --singularity-args '--bind /var/lib/minknow/data/pipeline_test/,/ ' -s /usr/local/software/lathe/Snakefile --configfile /usr/local/software/lathe/config.yaml --restart-times 0 --keep-going --latency-wait 30
{'SAMPLE_NAME': '', 'barcode1': ''}
Building DAG of jobs...
Pulling singularity image docker://quay.io/biocontainers/flye:2.4.2--py27he860b03_0.
Pulling singularity image docker://quay.io/biocontainers/racon:1.3.2--he941832_0.
Pulling singularity image shub://elimoss/lathe:htsbox.
WorkflowError:
Failed to pull singularity image from shub://elimoss/lathe:htsbox:
WARNING: Authentication token file not found : Only pulls of public images will succeed
FATAL: Failed to get manifest from Shub: No response received from singularity hub

File "/usr/lib/python3/dist-packages/snakemake/deployment/singularity.py", line 86, in pull

Any feedback on how I can get this to work? Have I written something wrong in the command?

Thanks,

Dan

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions